PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
18251-18300 / 86044 show all | |||||||||||||||
| hfeng-pmm1 | SNP | tv | map_l150_m0_e0 | homalt | 99.5118 | 99.7741 | 99.2509 | 78.2644 | 1325 | 3 | 1325 | 10 | 3 | 30.0000 | |
| hfeng-pmm2 | SNP | tv | map_l150_m0_e0 | homalt | 99.5118 | 99.7741 | 99.2509 | 78.3981 | 1325 | 3 | 1325 | 10 | 3 | 30.0000 | |
| gduggal-bwavard | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 96.0740 | 97.6929 | 94.5078 | 73.4922 | 1355 | 32 | 1325 | 77 | 11 | 14.2857 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l100_m2_e0 | * | 98.0425 | 97.0760 | 99.0284 | 79.6316 | 1328 | 40 | 1325 | 13 | 2 | 15.3846 | |
| eyeh-varpipe | INDEL | * | map_l125_m0_e0 | * | 96.5567 | 96.2585 | 96.8567 | 95.6158 | 849 | 33 | 1325 | 43 | 28 | 65.1163 | |
| ckim-vqsr | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 99.2975 | 98.8995 | 99.6988 | 78.3007 | 1348 | 15 | 1324 | 4 | 3 | 75.0000 | |
| ckim-vqsr | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 99.4741 | 99.1018 | 99.8492 | 51.2858 | 1324 | 12 | 1324 | 2 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 96.6173 | 96.2411 | 96.9963 | 75.2089 | 1357 | 53 | 1324 | 41 | 35 | 85.3659 | |
| jmaeng-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 99.1862 | 98.8261 | 99.5489 | 78.4824 | 1347 | 16 | 1324 | 6 | 3 | 50.0000 | |
| ckim-dragen | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 99.1853 | 99.0462 | 99.3248 | 77.9742 | 1350 | 13 | 1324 | 9 | 2 | 22.2222 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 98.0761 | 97.2854 | 98.8798 | 74.4855 | 1326 | 37 | 1324 | 15 | 8 | 53.3333 | |
| hfeng-pmm3 | SNP | tv | map_l150_m0_e0 | homalt | 99.4741 | 99.6988 | 99.2504 | 78.1634 | 1324 | 4 | 1324 | 10 | 3 | 30.0000 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.3995 | 99.6241 | 99.1760 | 40.3752 | 1325 | 5 | 1324 | 11 | 11 | 100.0000 | |
| jmaeng-gatk | INDEL | I1_5 | map_l100_m1_e0 | * | 97.7805 | 98.5063 | 97.0653 | 87.3586 | 1319 | 20 | 1323 | 40 | 5 | 12.5000 | |
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.9248 | 99.8496 | 100.0000 | 34.3750 | 1328 | 2 | 1323 | 0 | 0 | ||
| ckim-vqsr | INDEL | * | map_l125_m2_e0 | het | 95.6234 | 94.9676 | 96.2882 | 93.0044 | 1321 | 70 | 1323 | 51 | 5 | 9.8039 | |
| bgallagher-sentieon | INDEL | * | map_l150_m1_e0 | * | 97.9979 | 98.5800 | 97.4227 | 90.0883 | 1319 | 19 | 1323 | 35 | 7 | 20.0000 | |
| hfeng-pmm2 | INDEL | * | map_l150_m1_e0 | * | 97.9254 | 98.5800 | 97.2794 | 89.7079 | 1319 | 19 | 1323 | 37 | 6 | 16.2162 | |
| hfeng-pmm3 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 99.5111 | 99.0269 | 100.0000 | 52.7669 | 1323 | 13 | 1323 | 0 | 0 | ||
| ckim-dragen | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 97.4000 | 96.5248 | 98.2912 | 75.1339 | 1361 | 49 | 1323 | 23 | 18 | 78.2609 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.1754 | 99.4737 | 98.8789 | 38.7923 | 1323 | 7 | 1323 | 15 | 13 | 86.6667 | |
| ndellapenna-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 98.9147 | 98.8772 | 98.9521 | 56.9032 | 1321 | 15 | 1322 | 14 | 5 | 35.7143 | |
| egarrison-hhga | INDEL | I1_5 | map_l100_m1_e0 | * | 98.8042 | 98.7304 | 98.8781 | 83.3892 | 1322 | 17 | 1322 | 15 | 3 | 20.0000 | |
| egarrison-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.2492 | 99.3985 | 99.1004 | 39.5833 | 1322 | 8 | 1322 | 12 | 10 | 83.3333 | |
| ltrigg-rtg1 | INDEL | * | map_l125_m2_e1 | het | 96.2007 | 93.4659 | 99.1004 | 79.7418 | 1316 | 92 | 1322 | 12 | 0 | 0.0000 | |
| jpowers-varprowl | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 98.5827 | 98.8772 | 98.2900 | 65.3261 | 1321 | 15 | 1322 | 23 | 8 | 34.7826 | |
| raldana-dualsentieon | SNP | tv | map_l150_m0_e0 | homalt | 99.6608 | 99.5482 | 99.7736 | 73.0800 | 1322 | 6 | 1322 | 3 | 1 | 33.3333 | |
| asubramanian-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 99.3985 | 98.9521 | 99.8489 | 49.8485 | 1322 | 14 | 1322 | 2 | 0 | 0.0000 | |
| ltrigg-rtg1 | SNP | tv | map_l150_m0_e0 | homalt | 99.6981 | 99.4729 | 99.9244 | 76.2016 | 1321 | 7 | 1321 | 1 | 1 | 100.0000 | |
| qzeng-custom | INDEL | * | map_l100_m1_e0 | homalt | 85.1872 | 78.2396 | 93.4890 | 80.8459 | 960 | 267 | 1321 | 92 | 13 | 14.1304 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.8494 | 99.6992 | 100.0000 | 33.0461 | 1326 | 4 | 1321 | 0 | 0 | ||
| qzeng-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 98.3268 | 99.3263 | 97.3471 | 64.9445 | 1327 | 9 | 1321 | 36 | 3 | 8.3333 | |
| gduggal-snapplat | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 32.5229 | 33.1367 | 31.9314 | 80.3989 | 1292 | 2607 | 1321 | 2816 | 99 | 3.5156 | |
| jlack-gatk | INDEL | I1_5 | map_l100_m1_e0 | * | 96.8806 | 98.3570 | 95.4480 | 86.8027 | 1317 | 22 | 1321 | 63 | 6 | 9.5238 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l100_m1_e0 | * | 98.7628 | 98.2823 | 99.2481 | 82.0270 | 1316 | 23 | 1320 | 10 | 4 | 40.0000 | |
| hfeng-pmm1 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 99.3976 | 98.8024 | 100.0000 | 50.1134 | 1320 | 16 | 1320 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | * | map_l150_m1_e0 | * | 98.2484 | 98.3558 | 98.1413 | 87.8949 | 1316 | 22 | 1320 | 25 | 6 | 24.0000 | |
| mlin-fermikit | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 97.5982 | 96.9186 | 98.2874 | 71.4134 | 1321 | 42 | 1320 | 23 | 20 | 86.9565 | |
| jli-custom | SNP | tv | map_l150_m0_e0 | homalt | 99.5851 | 99.3976 | 99.7732 | 73.0220 | 1320 | 8 | 1320 | 3 | 3 | 100.0000 | |
| gduggal-bwavard | INDEL | * | map_l125_m1_e0 | het | 90.3770 | 98.4270 | 83.5443 | 91.2553 | 1314 | 21 | 1320 | 260 | 67 | 25.7692 | |
| bgallagher-sentieon | SNP | tv | map_l150_m0_e0 | homalt | 99.5475 | 99.3976 | 99.6979 | 74.9100 | 1320 | 8 | 1320 | 4 | 3 | 75.0000 | |
| egarrison-hhga | INDEL | D16_PLUS | HG002complexvar | * | 85.7883 | 79.5496 | 93.0889 | 62.2772 | 1307 | 336 | 1320 | 98 | 72 | 73.4694 | |
| ckim-gatk | INDEL | * | map_l150_m1_e0 | * | 95.5806 | 98.3558 | 92.9577 | 92.6180 | 1316 | 22 | 1320 | 100 | 9 | 9.0000 | |
| ckim-gatk | INDEL | * | map_l125_m1_e0 | het | 95.3358 | 98.5019 | 92.3669 | 91.9308 | 1315 | 20 | 1319 | 109 | 7 | 6.4220 | |
| cchapple-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.8117 | 99.6241 | 100.0000 | 33.6853 | 1325 | 5 | 1319 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 95.4096 | 96.1426 | 94.6877 | 69.8615 | 1321 | 53 | 1319 | 74 | 68 | 91.8919 | |
| ndellapenna-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 98.1764 | 97.4871 | 98.8756 | 71.7313 | 1319 | 34 | 1319 | 15 | 8 | 53.3333 | |
| ltrigg-rtg2 | SNP | tv | map_l150_m0_e0 | homalt | 99.6224 | 99.3223 | 99.9242 | 72.7891 | 1319 | 9 | 1319 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 94.6465 | 93.3333 | 95.9971 | 67.9047 | 1316 | 94 | 1319 | 55 | 15 | 27.2727 | |
| qzeng-custom | INDEL | D16_PLUS | HG002complexvar | het | 88.4674 | 95.9350 | 82.0784 | 59.1925 | 1062 | 45 | 1319 | 288 | 45 | 15.6250 | |