PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1651-1700 / 86044 show all | |||||||||||||||
| hfeng-pmm2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 99.0097 | 98.4465 | 99.5795 | 70.5535 | 44992 | 710 | 44993 | 190 | 10 | 5.2632 | |
| egarrison-hhga | INDEL | * | HG002complexvar | het | 97.6548 | 97.3665 | 97.9448 | 54.4695 | 44995 | 1217 | 44989 | 944 | 675 | 71.5042 | |
| ckim-vqsr | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 98.9367 | 98.4377 | 99.4408 | 75.9589 | 44988 | 714 | 44988 | 253 | 34 | 13.4387 | |
| ckim-vqsr | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 98.9367 | 98.4377 | 99.4408 | 75.9589 | 44988 | 714 | 44988 | 253 | 34 | 13.4387 | |
| raldana-dualsentieon | SNP | * | map_l100_m1_e0 | het | 99.0827 | 99.1953 | 98.9703 | 66.7199 | 44994 | 365 | 44983 | 468 | 7 | 1.4957 | |
| hfeng-pmm1 | SNP | * | map_l125_m1_e0 | * | 99.4583 | 99.2389 | 99.6786 | 68.9911 | 44982 | 345 | 44976 | 145 | 41 | 28.2759 | |
| ghariani-varprowl | SNP | * | map_l100_m1_e0 | het | 97.8610 | 99.1424 | 96.6122 | 73.4449 | 44970 | 389 | 44973 | 1577 | 254 | 16.1065 | |
| gduggal-snapvard | SNP | * | map_l125_m2_e1 | * | 93.7321 | 96.5489 | 91.0750 | 79.3697 | 45573 | 1629 | 44971 | 4407 | 338 | 7.6696 | |
| raldana-dualsentieon | SNP | * | map_l125_m1_e0 | * | 99.1433 | 99.2014 | 99.0854 | 69.5094 | 44965 | 362 | 44959 | 415 | 15 | 3.6145 | |
| rpoplin-dv42 | SNP | * | map_l100_m1_e0 | het | 99.2638 | 99.1402 | 99.3876 | 64.2170 | 44969 | 390 | 44957 | 277 | 141 | 50.9025 | |
| jli-custom | SNP | * | map_l100_m1_e0 | het | 99.2812 | 99.1159 | 99.4470 | 63.0672 | 44958 | 401 | 44955 | 250 | 62 | 24.8000 | |
| hfeng-pmm1 | SNP | * | map_l100_m1_e0 | het | 99.4173 | 99.1159 | 99.7205 | 63.9471 | 44958 | 401 | 44947 | 126 | 32 | 25.3968 | |
| mlin-fermikit | SNP | ti | map_siren | het | 83.4382 | 72.0464 | 99.1091 | 46.3223 | 44944 | 17438 | 44944 | 404 | 15 | 3.7129 | |
| ckim-dragen | SNP | * | map_l125_m1_e0 | * | 98.3997 | 99.0866 | 97.7222 | 72.8507 | 44913 | 414 | 44919 | 1047 | 117 | 11.1748 | |
| jli-custom | SNP | * | map_l125_m1_e0 | * | 99.3178 | 99.0844 | 99.5522 | 66.7512 | 44912 | 415 | 44909 | 202 | 67 | 33.1683 | |
| gduggal-bwafb | SNP | * | map_l100_m1_e0 | het | 98.6881 | 99.0035 | 98.3746 | 69.4458 | 44907 | 452 | 44909 | 742 | 142 | 19.1375 | |
| egarrison-hhga | SNP | * | map_l125_m1_e0 | * | 99.4419 | 99.0690 | 99.8177 | 68.7095 | 44905 | 422 | 44905 | 82 | 41 | 50.0000 | |
| hfeng-pmm3 | INDEL | * | HG002complexvar | het | 98.8973 | 97.9724 | 99.8399 | 56.4422 | 45275 | 937 | 44901 | 72 | 42 | 58.3333 | |
| rpoplin-dv42 | SNP | * | map_l125_m1_e0 | * | 99.2363 | 99.0558 | 99.4176 | 68.8661 | 44899 | 428 | 44893 | 263 | 168 | 63.8783 | |
| hfeng-pmm1 | INDEL | * | HG002complexvar | het | 98.8731 | 97.9378 | 99.8265 | 56.4583 | 45259 | 953 | 44888 | 78 | 43 | 55.1282 | |
| egarrison-hhga | SNP | * | map_l100_m1_e0 | het | 99.3656 | 98.9352 | 99.7999 | 63.8790 | 44876 | 483 | 44877 | 90 | 31 | 34.4444 | |
| hfeng-pmm2 | INDEL | * | HG002complexvar | het | 98.8368 | 97.8772 | 99.8154 | 56.6580 | 45231 | 981 | 44870 | 83 | 50 | 60.2410 | |
| ndellapenna-hhga | INDEL | * | HG002complexvar | het | 97.4850 | 96.9835 | 97.9917 | 54.0711 | 44818 | 1394 | 44840 | 919 | 671 | 73.0141 | |
| mlin-fermikit | SNP | * | map_l100_m2_e0 | * | 72.7370 | 60.6281 | 90.8897 | 55.5979 | 44843 | 29121 | 44835 | 4494 | 3956 | 88.0285 | |
| astatham-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 98.9429 | 98.0986 | 99.8019 | 70.2570 | 44833 | 869 | 44833 | 89 | 30 | 33.7079 | |
| astatham-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 98.9429 | 98.0986 | 99.8019 | 70.2570 | 44833 | 869 | 44833 | 89 | 30 | 33.7079 | |
| raldana-dualsentieon | INDEL | * | HG002complexvar | het | 98.7829 | 97.8101 | 99.7752 | 56.2974 | 45200 | 1012 | 44831 | 101 | 72 | 71.2871 | |
| qzeng-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.6793 | 98.2539 | 97.1113 | 81.2381 | 44904 | 798 | 44812 | 1333 | 148 | 11.1028 | |
| qzeng-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 97.6793 | 98.2539 | 97.1113 | 81.2381 | 44904 | 798 | 44812 | 1333 | 148 | 11.1028 | |
| gduggal-bwafb | SNP | * | map_l125_m1_e0 | * | 98.8277 | 98.8550 | 98.8005 | 72.4101 | 44808 | 519 | 44808 | 544 | 134 | 24.6324 | |
| jlack-gatk | SNP | * | map_l125_m1_e0 | * | 96.1255 | 98.8638 | 93.5349 | 78.9418 | 44812 | 515 | 44806 | 3097 | 238 | 7.6849 | |
| gduggal-snapvard | SNP | * | map_l100_m2_e1 | het | 93.3754 | 96.7973 | 90.1872 | 78.6618 | 45396 | 1502 | 44805 | 4875 | 376 | 7.7128 | |
| eyeh-varpipe | SNP | * | map_l100_m2_e0 | het | 97.9986 | 99.6659 | 96.3860 | 71.4860 | 46244 | 155 | 44753 | 1678 | 34 | 2.0262 | |
| ghariani-varprowl | SNP | * | map_l125_m1_e0 | * | 97.9382 | 98.7204 | 97.1684 | 75.3206 | 44747 | 580 | 44747 | 1304 | 273 | 20.9356 | |
| ltrigg-rtg2 | INDEL | * | HG002complexvar | het | 99.0269 | 98.6108 | 99.4465 | 53.1360 | 45570 | 642 | 44739 | 249 | 116 | 46.5863 | |
| jpowers-varprowl | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 78.6453 | 92.3929 | 68.4589 | 73.0930 | 44599 | 3672 | 44716 | 20602 | 20414 | 99.0875 | |
| gduggal-bwavard | SNP | * | map_l100_m2_e0 | het | 95.2824 | 97.5581 | 93.1104 | 79.2787 | 45266 | 1133 | 44693 | 3307 | 217 | 6.5618 | |
| ndellapenna-hhga | SNP | * | map_l125_m1_e0 | * | 99.1686 | 98.5527 | 99.7922 | 67.5463 | 44671 | 656 | 44671 | 93 | 49 | 52.6882 | |
| gduggal-bwavard | INDEL | * | HG002complexvar | het | 91.7227 | 97.3578 | 86.7042 | 60.1106 | 44991 | 1221 | 44670 | 6850 | 5497 | 80.2482 | |
| ckim-isaac | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 94.7847 | 94.6676 | 94.9020 | 63.1937 | 45697 | 2574 | 44659 | 2399 | 1704 | 71.0296 | |
| gduggal-snapplat | SNP | * | map_l100_m2_e1 | het | 95.2787 | 95.1235 | 95.4344 | 81.1824 | 44611 | 2287 | 44649 | 2136 | 1068 | 50.0000 | |
| ndellapenna-hhga | SNP | * | map_l100_m1_e0 | het | 99.0732 | 98.3928 | 99.7631 | 62.7556 | 44630 | 729 | 44632 | 106 | 41 | 38.6792 | |
| ltrigg-rtg1 | SNP | * | map_l125_m1_e0 | * | 99.1092 | 98.4292 | 99.7987 | 62.1857 | 44615 | 712 | 44616 | 90 | 28 | 31.1111 | |
| ltrigg-rtg1 | INDEL | * | HG002complexvar | het | 98.9136 | 98.2515 | 99.5847 | 53.0906 | 45404 | 808 | 44604 | 186 | 79 | 42.4731 | |
| ltrigg-rtg1 | SNP | * | map_l100_m1_e0 | het | 98.9962 | 98.2804 | 99.7226 | 54.6285 | 44579 | 780 | 44576 | 124 | 12 | 9.6774 | |
| gduggal-bwavard | SNP | tv | map_siren | * | 96.6959 | 97.4309 | 95.9719 | 67.9885 | 44750 | 1180 | 44530 | 1869 | 157 | 8.4002 | |
| gduggal-snapfb | SNP | * | map_l100_m1_e0 | het | 97.2532 | 98.1503 | 96.3723 | 66.8525 | 44520 | 839 | 44524 | 1676 | 659 | 39.3198 | |
| gduggal-snapvard | SNP | * | map_l125_m2_e0 | * | 93.7014 | 96.5392 | 91.0256 | 79.3194 | 45106 | 1617 | 44517 | 4389 | 336 | 7.6555 | |
| ltrigg-rtg2 | SNP | * | map_l125_m1_e0 | * | 98.9740 | 98.1071 | 99.8563 | 58.5564 | 44469 | 858 | 44470 | 64 | 15 | 23.4375 | |
| ltrigg-rtg2 | SNP | * | map_l100_m1_e0 | het | 98.8659 | 98.0136 | 99.7330 | 50.5607 | 44458 | 901 | 44456 | 119 | 8 | 6.7227 | |