PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
16451-16500 / 86044 show all | |||||||||||||||
| asubramanian-gatk | INDEL | D1_5 | map_l100_m2_e1 | * | 93.0516 | 89.7370 | 96.6205 | 87.5894 | 1740 | 199 | 1744 | 61 | 7 | 11.4754 | |
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 96.4603 | 93.8144 | 99.2597 | 35.4174 | 1547 | 102 | 1743 | 13 | 13 | 100.0000 | |
| eyeh-varpipe | SNP | ti | map_l250_m2_e1 | homalt | 99.8298 | 99.7743 | 99.8854 | 88.9822 | 1768 | 4 | 1743 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | SNP | ti | map_l250_m2_e1 | homalt | 98.9217 | 98.3634 | 99.4863 | 87.6793 | 1743 | 29 | 1743 | 9 | 9 | 100.0000 | |
| jmaeng-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 99.0341 | 98.8095 | 99.2597 | 89.1343 | 1743 | 21 | 1743 | 13 | 10 | 76.9231 | |
| raldana-dualsentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 91.0894 | 90.4040 | 91.7852 | 74.4242 | 1969 | 209 | 1743 | 156 | 147 | 94.2308 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 96.4603 | 93.8144 | 99.2597 | 35.4174 | 1547 | 102 | 1743 | 13 | 13 | 100.0000 | |
| cchapple-custom | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.7161 | 99.4907 | 99.9426 | 43.6105 | 1758 | 9 | 1742 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 93.0177 | 97.5624 | 88.8776 | 88.4848 | 1721 | 43 | 1742 | 218 | 16 | 7.3395 | |
| hfeng-pmm2 | SNP | ti | map_l250_m2_e0 | homalt | 99.5429 | 99.5998 | 99.4860 | 87.7706 | 1742 | 7 | 1742 | 9 | 2 | 22.2222 | |
| hfeng-pmm3 | SNP | ti | map_l250_m2_e0 | homalt | 99.5429 | 99.5998 | 99.4860 | 87.7295 | 1742 | 7 | 1742 | 9 | 2 | 22.2222 | |
| hfeng-pmm1 | SNP | tv | map_l250_m1_e0 | het | 98.1685 | 97.4818 | 98.8649 | 87.9315 | 1742 | 45 | 1742 | 20 | 2 | 10.0000 | |
| hfeng-pmm1 | SNP | ti | map_l250_m2_e0 | homalt | 99.5141 | 99.5426 | 99.4857 | 87.7793 | 1741 | 8 | 1741 | 9 | 2 | 22.2222 | |
| gduggal-bwavard | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 64.9017 | 48.2133 | 99.2588 | 53.0137 | 1754 | 1884 | 1741 | 13 | 10 | 76.9231 | |
| gduggal-bwafb | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.1176 | 98.5286 | 99.7136 | 61.8611 | 1741 | 26 | 1741 | 5 | 5 | 100.0000 | |
| gduggal-snapplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 78.2077 | 80.0368 | 76.4603 | 79.5968 | 1740 | 434 | 1741 | 536 | 6 | 1.1194 | |
| ltrigg-rtg1 | SNP | ti | map_l250_m2_e0 | homalt | 99.6280 | 99.5426 | 99.7136 | 87.3322 | 1741 | 8 | 1741 | 5 | 5 | 100.0000 | |
| jmaeng-gatk | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 99.7420 | 99.5423 | 99.9426 | 61.0950 | 1740 | 8 | 1740 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | SNP | ti | map_l250_m2_e1 | homalt | 99.0324 | 98.1941 | 99.8852 | 88.8818 | 1740 | 32 | 1740 | 2 | 2 | 100.0000 | |
| hfeng-pmm2 | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 99.6849 | 99.5423 | 99.8279 | 67.4388 | 1740 | 8 | 1740 | 3 | 1 | 33.3333 | |
| ckim-isaac | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 96.7398 | 94.7570 | 98.8075 | 51.0833 | 1735 | 96 | 1740 | 21 | 1 | 4.7619 | |
| cchapple-custom | INDEL | I1_5 | map_siren | het | 97.7116 | 97.5610 | 97.8628 | 81.6928 | 1640 | 41 | 1740 | 38 | 12 | 31.5789 | |
| ckim-gatk | SNP | ti | map_l250_m1_e0 | het | 72.9254 | 58.6253 | 96.4523 | 96.6462 | 1740 | 1228 | 1740 | 64 | 8 | 12.5000 | |
| raldana-dualsentieon | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 99.7135 | 99.5423 | 99.8852 | 59.7783 | 1740 | 8 | 1740 | 2 | 1 | 50.0000 | |
| ltrigg-rtg2 | SNP | ti | map_l250_m2_e0 | homalt | 99.6564 | 99.4854 | 99.8279 | 85.6390 | 1740 | 9 | 1740 | 3 | 3 | 100.0000 | |
| ltrigg-rtg2 | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.3449 | 98.6984 | 100.0000 | 53.9460 | 1744 | 23 | 1739 | 0 | 0 | ||
| qzeng-custom | SNP | tv | map_l250_m1_e0 | * | 76.9830 | 65.9992 | 92.3526 | 95.3560 | 1747 | 900 | 1739 | 144 | 117 | 81.2500 | |
| gduggal-bwaplat | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 95.9405 | 94.8116 | 97.0966 | 77.0267 | 1736 | 95 | 1739 | 52 | 3 | 5.7692 | |
| jli-custom | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 99.7133 | 99.4851 | 99.9425 | 62.4676 | 1739 | 9 | 1739 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 67.5632 | 66.2900 | 68.8862 | 64.2887 | 1760 | 895 | 1738 | 785 | 746 | 95.0318 | |
| astatham-gatk | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 99.6558 | 99.3707 | 99.9425 | 60.7763 | 1737 | 11 | 1737 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 99.6844 | 99.3707 | 100.0000 | 60.6925 | 1737 | 11 | 1737 | 0 | 0 | ||
| dgrover-gatk | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 99.6558 | 99.3707 | 99.9425 | 60.9526 | 1737 | 11 | 1737 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | HG002compoundhet | hetalt | 90.3511 | 82.9909 | 99.1438 | 40.2252 | 1737 | 356 | 1737 | 15 | 11 | 73.3333 | |
| hfeng-pmm1 | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 99.6558 | 99.3707 | 99.9425 | 65.7132 | 1737 | 11 | 1737 | 1 | 1 | 100.0000 | |
| jlack-gatk | SNP | tv | map_l250_m1_e0 | het | 88.8718 | 97.2020 | 81.8567 | 93.7753 | 1737 | 50 | 1737 | 385 | 18 | 4.6753 | |
| hfeng-pmm3 | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 99.6272 | 99.3707 | 99.8850 | 65.1363 | 1737 | 11 | 1737 | 2 | 1 | 50.0000 | |
| ckim-gatk | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 99.6558 | 99.3707 | 99.9425 | 60.9877 | 1737 | 11 | 1737 | 1 | 1 | 100.0000 | |
| mlin-fermikit | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 96.1773 | 99.3135 | 93.2331 | 71.4592 | 1736 | 12 | 1736 | 126 | 98 | 77.7778 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 58.2480 | 73.8182 | 48.1020 | 32.1234 | 609 | 216 | 1736 | 1873 | 1859 | 99.2525 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 58.2480 | 73.8182 | 48.1020 | 32.1234 | 609 | 216 | 1736 | 1873 | 1859 | 99.2525 | |
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 97.1461 | 96.8750 | 97.4186 | 69.7659 | 1736 | 56 | 1736 | 46 | 39 | 84.7826 | |
| jlack-gatk | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 99.5984 | 99.3135 | 99.8849 | 60.1010 | 1736 | 12 | 1736 | 2 | 2 | 100.0000 | |
| ckim-dragen | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 98.8223 | 98.1693 | 99.4839 | 59.8527 | 1716 | 32 | 1735 | 9 | 2 | 22.2222 | |
| ckim-isaac | INDEL | I6_15 | HG002complexvar | het | 79.6121 | 75.4140 | 84.3052 | 55.5219 | 1776 | 579 | 1735 | 323 | 120 | 37.1517 | |
| egarrison-hhga | SNP | ti | map_l250_m2_e0 | homalt | 99.5125 | 99.1995 | 99.8274 | 87.5412 | 1735 | 14 | 1735 | 3 | 3 | 100.0000 | |
| jmaeng-gatk | SNP | ti | map_l250_m1_e0 | het | 72.8227 | 58.4569 | 96.5498 | 96.7644 | 1735 | 1233 | 1735 | 62 | 7 | 11.2903 | |
| anovak-vg | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 33.8729 | 24.3264 | 55.7519 | 39.1474 | 948 | 2949 | 1735 | 1377 | 1147 | 83.2970 | |
| gduggal-snapfb | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 89.5049 | 98.6984 | 81.8782 | 76.1990 | 1744 | 23 | 1735 | 384 | 49 | 12.7604 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | HG002compoundhet | * | 88.6244 | 82.1745 | 96.1730 | 41.5559 | 1761 | 382 | 1734 | 69 | 67 | 97.1014 | |