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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TP Query FPFP gt% FP ma
15851-15900 / 86044 show all
hfeng-pmm3INDELI16_PLUSHG002compoundhethetalt
96.1827
92.6899
99.9490
46.0226
1940153196011
100.0000
gduggal-bwafbINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
82.5111
88.7732
77.0743
58.5831
19612481960583573
98.2847
gduggal-bwafbINDELD1_5lowcmp_SimpleRepeat_diTR_11to50hetalt
94.3169
89.7764
99.3411
33.3446
618270419601313
100.0000
asubramanian-gatkSNPtvmap_l150_m2_e0het
42.5209
27.0270
99.6439
95.4728
19605292195971
14.2857
gduggal-bwaplatSNPtimap_l250_m2_e0*
56.1308
39.0775
99.5931
97.1311
19573051195882
25.0000
eyeh-varpipeINDEL*lowcmp_SimpleRepeat_quadTR_11to50hetalt
55.8931
39.9329
93.1051
68.6867
107116111958145138
95.1724
jli-customINDELD16_PLUSHG002compoundhethetalt
97.5241
95.5394
99.5931
24.6166
184286195888
100.0000
ckim-dragenINDELI16_PLUSHG002compoundhet*
93.5490
91.3672
95.8374
52.5778
195818519578585
100.0000
ckim-gatkINDELI16_PLUS*hetalt
95.7167
92.0877
99.6434
54.9150
1932166195676
85.7143
qzeng-customSNPtvmap_l250_m2_e1*
78.0956
67.4211
92.7860
95.3708
19669501955152125
82.2368
hfeng-pmm2INDELD16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_merged*
94.5176
92.5752
96.5432
70.8171
197015819557056
80.0000
hfeng-pmm2INDELI16_PLUSHG002compoundhethetalt
96.0539
92.4510
99.9489
46.1750
1935158195511
100.0000
ckim-vqsrINDELI16_PLUS*hetalt
95.6650
91.9924
99.6430
54.9403
1930168195476
85.7143
anovak-vgINDELI6_15HG002compoundhet*
31.2822
22.7666
49.9744
31.5356
19986778195419561488
76.0736
ghariani-varprowlINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50*
56.6451
52.8614
61.0122
54.6408
19491738195312481228
98.3974
gduggal-bwafbINDELD16_PLUSHG002compoundhet*
82.3584
75.6514
90.3704
28.6893
17715701952208208
100.0000
jmaeng-gatkINDELD6_15lowcmp_SimpleRepeat_diTR_11to50homalt
98.3623
99.9488
96.8254
41.7173
1952119526462
96.8750
raldana-dualsentieonINDELD6_15lowcmp_SimpleRepeat_diTR_11to50homalt
98.2138
99.9488
96.5381
40.8253
1952119527069
98.5714
ckim-vqsrINDELD6_15lowcmp_SimpleRepeat_diTR_11to50homalt
98.3615
99.8976
96.8719
41.6063
1951219516362
98.4127
dgrover-gatkINDELD6_15lowcmp_SimpleRepeat_diTR_11to50homalt
98.3863
99.8976
96.9200
41.5335
1951219516262
100.0000
ckim-gatkINDELD6_15lowcmp_SimpleRepeat_diTR_11to50homalt
98.3615
99.8976
96.8719
41.6063
1951219516362
98.4127
astatham-gatkINDELD6_15lowcmp_SimpleRepeat_diTR_11to50homalt
98.3863
99.8976
96.9200
41.4826
1951219516262
100.0000
bgallagher-sentieonINDELD6_15lowcmp_SimpleRepeat_diTR_11to50homalt
97.6232
99.8976
95.4501
41.3150
1951219519392
98.9247
ckim-gatkINDELI16_PLUSHG002compoundhethetalt
95.8494
92.1166
99.8975
44.7808
1928165195022
100.0000
rpoplin-dv42INDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
93.8172
88.6758
99.5914
32.3428
1942248195088
100.0000
jli-customINDELD6_15lowcmp_SimpleRepeat_diTR_11to50homalt
99.1609
99.8464
98.4848
39.5973
1950319503030
100.0000
gduggal-bwaplatINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
89.4563
82.1519
98.1864
56.4502
194742319493633
91.6667
hfeng-pmm2INDELD6_15lowcmp_SimpleRepeat_diTR_11to50homalt
99.2106
99.7440
98.6829
40.0729
1948519482625
96.1538
ckim-vqsrINDELI16_PLUSHG002compoundhethetalt
95.7976
92.0210
99.8974
44.8061
1926167194822
100.0000
jlack-gatkINDELD16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_merged*
92.9210
92.2462
93.6058
72.7642
19631651947133117
87.9699
gduggal-snapvardINDELI6_15lowcmp_SimpleRepeat_diTR_11to50*
44.3676
44.4859
44.2500
32.4739
10731339194724532342
95.4749
jmaeng-gatkINDELI16_PLUS*hetalt
95.5588
91.7541
99.6928
55.4720
1925173194765
83.3333
qzeng-customINDELD16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_merged*
73.2113
82.3308
65.9106
63.8478
175237619471007294
29.1956
jlack-gatkINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
89.0334
80.6002
99.4376
31.3443
190745919451110
90.9091
hfeng-pmm1INDELD6_15lowcmp_SimpleRepeat_diTR_11to50homalt
99.3868
99.5904
99.1841
39.0236
1945819451616
100.0000
dgrover-gatkINDELD16_PLUSHG002compoundhethetalt
97.0887
94.7095
99.5904
26.5237
1826102194588
100.0000
bgallagher-sentieonINDELI16_PLUSHG002compoundhet*
93.0399
90.7606
95.4367
53.0631
194519819459393
100.0000
ciseli-customSNPtimap_l250_m2_e0het
64.2691
59.7419
69.5388
93.5208
19441310194585220
2.3474
ckim-dragenINDELD6_15lowcmp_SimpleRepeat_diTR_11to50homalt
95.3176
99.5904
91.3963
41.9328
194581944183182
99.4536
qzeng-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
96.4272
98.7275
94.2317
67.6240
186224194411918
15.1261
hfeng-pmm3INDELD6_15lowcmp_SimpleRepeat_diTR_11to50homalt
99.2343
99.5392
98.9313
39.6684
1944919442120
95.2381
gduggal-snapfbINDEL*lowcmp_SimpleRepeat_triTR_11to50homalt
92.5726
90.3810
94.8730
43.3628
1945207194310574
70.4762
gduggal-bwafbINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
89.0929
83.6170
95.3363
63.5012
117923119429538
40.0000
jlack-gatkINDELD6_15lowcmp_SimpleRepeat_diTR_11to50homalt
97.4410
99.4368
95.5239
41.0041
19421119429191
100.0000
ciseli-customINDELI1_5map_siren*
68.4975
64.7920
72.6525
80.4862
194710581942731614
83.9945
astatham-gatkINDELD16_PLUSHG002compoundhethetalt
97.0065
94.5539
99.5897
26.4429
1823105194288
100.0000
gduggal-snapvardSNPtilowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
75.9223
95.2075
63.1339
85.1688
1927971942113422
1.9400
asubramanian-gatkINDELD6_15lowcmp_SimpleRepeat_diTR_11to50homalt
97.9067
99.3856
96.4712
41.4606
19411219417167
94.3662
jmaeng-gatkINDELI16_PLUSHG002compoundhethetalt
95.6914
91.7821
99.9485
44.7982
1921172194111
100.0000
ckim-gatkINDELD16_PLUSHG002compoundhethetalt
96.8969
94.3465
99.5891
25.8850
1819109193988
100.0000