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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
15051-15100 / 86044 show all | |||||||||||||||
| hfeng-pmm1 | INDEL | I6_15 | HG002complexvar | het | 98.5354 | 97.1550 | 99.9556 | 58.9168 | 2288 | 67 | 2252 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.9778 | 99.9556 | 100.0000 | 53.1919 | 2251 | 1 | 2251 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 62.7608 | 46.6890 | 95.7058 | 37.3301 | 2228 | 2544 | 2251 | 101 | 89 | 88.1188 | |
| raldana-dualsentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.9778 | 99.9556 | 100.0000 | 51.6849 | 2251 | 1 | 2251 | 0 | 0 | ||
| bgallagher-sentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.9778 | 99.9556 | 100.0000 | 51.4033 | 2251 | 1 | 2251 | 0 | 0 | ||
| jli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.9778 | 99.9556 | 100.0000 | 51.9120 | 2251 | 1 | 2251 | 0 | 0 | ||
| jli-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 95.6226 | 93.3223 | 98.0392 | 55.3589 | 2250 | 161 | 2250 | 45 | 42 | 93.3333 | |
| jmaeng-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.9556 | 99.9112 | 100.0000 | 52.0358 | 2250 | 2 | 2250 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | * | map_l100_m2_e1 | het | 97.4082 | 96.3295 | 98.5114 | 78.5661 | 2257 | 86 | 2250 | 34 | 4 | 11.7647 | |
| mlin-fermikit | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 98.5976 | 99.8224 | 97.4026 | 57.6846 | 2248 | 4 | 2250 | 60 | 49 | 81.6667 | |
| hfeng-pmm3 | INDEL | I6_15 | HG002complexvar | het | 98.4917 | 97.0701 | 99.9556 | 58.8257 | 2286 | 69 | 2250 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.9556 | 99.9112 | 100.0000 | 52.9781 | 2250 | 2 | 2250 | 0 | 0 | ||
| jlack-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.9334 | 99.9112 | 99.9556 | 51.6538 | 2250 | 2 | 2250 | 1 | 1 | 100.0000 | |
| dgrover-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.9556 | 99.9112 | 100.0000 | 51.6129 | 2250 | 2 | 2250 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 88.0685 | 85.1768 | 91.1634 | 69.1509 | 2264 | 394 | 2249 | 218 | 103 | 47.2477 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 58.3043 | 52.2088 | 66.0112 | 56.8516 | 2080 | 1904 | 2249 | 1158 | 1030 | 88.9465 | |
| ckim-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.9333 | 99.8668 | 100.0000 | 51.4674 | 2249 | 3 | 2249 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I6_15 | HG002complexvar | het | 98.4267 | 97.0276 | 99.8668 | 58.9949 | 2285 | 70 | 2249 | 3 | 2 | 66.6667 | |
| rpoplin-dv42 | INDEL | * | map_l100_m2_e0 | het | 97.6728 | 97.2258 | 98.1239 | 84.2550 | 2243 | 64 | 2249 | 43 | 19 | 44.1860 | |
| cchapple-custom | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 85.6343 | 78.9796 | 93.5135 | 45.7111 | 387 | 103 | 2249 | 156 | 148 | 94.8718 | |
| anovak-vg | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 63.4822 | 58.5761 | 69.2853 | 62.7923 | 2131 | 1507 | 2249 | 997 | 694 | 69.6088 | |
| hfeng-pmm2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.9111 | 99.8224 | 100.0000 | 54.2066 | 2248 | 4 | 2248 | 0 | 0 | ||
| gduggal-snapvard | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 96.3822 | 94.6628 | 98.1651 | 78.9575 | 2288 | 129 | 2247 | 42 | 19 | 45.2381 | |
| ckim-isaac | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 96.0776 | 92.7182 | 99.6894 | 66.0081 | 2241 | 176 | 2247 | 7 | 6 | 85.7143 | |
| astatham-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.8889 | 99.7780 | 100.0000 | 51.4582 | 2247 | 5 | 2247 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D1_5 | map_siren | het | 96.3818 | 97.5406 | 95.2502 | 79.8220 | 2221 | 56 | 2246 | 112 | 13 | 11.6071 | |
| raldana-dualsentieon | INDEL | * | map_l100_m2_e0 | het | 97.6490 | 97.1391 | 98.1643 | 83.4371 | 2241 | 66 | 2246 | 42 | 8 | 19.0476 | |
| ckim-vqsr | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.8666 | 99.7336 | 100.0000 | 51.5008 | 2246 | 6 | 2246 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D1_5 | map_siren | het | 98.4865 | 98.5946 | 98.3786 | 78.7325 | 2245 | 32 | 2245 | 37 | 15 | 40.5405 | |
| ckim-dragen | INDEL | D1_5 | map_siren | het | 97.9286 | 98.6825 | 97.1861 | 82.8253 | 2247 | 30 | 2245 | 65 | 4 | 6.1539 | |
| cchapple-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 98.5778 | 97.7459 | 99.4240 | 60.7000 | 477 | 11 | 2244 | 13 | 9 | 69.2308 | |
| ltrigg-rtg1 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 98.9606 | 99.8160 | 98.1198 | 64.2712 | 2170 | 4 | 2244 | 43 | 1 | 2.3256 | |
| ndellapenna-hhga | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.6448 | 99.6448 | 99.6448 | 54.2090 | 2244 | 8 | 2244 | 8 | 6 | 75.0000 | |
| ckim-vqsr | INDEL | * | map_l100_m2_e1 | het | 96.2442 | 95.6466 | 96.8494 | 90.9830 | 2241 | 102 | 2244 | 73 | 11 | 15.0685 | |
| egarrison-hhga | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.7332 | 99.6004 | 99.8664 | 53.4604 | 2243 | 9 | 2243 | 3 | 1 | 33.3333 | |
| asubramanian-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.5782 | 99.6004 | 99.5561 | 52.7078 | 2243 | 9 | 2243 | 10 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | map_siren | het | 98.8087 | 98.2872 | 99.3357 | 77.5055 | 2238 | 39 | 2243 | 15 | 0 | 0.0000 | |
| rpoplin-dv42 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.7998 | 99.6004 | 100.0000 | 54.6227 | 2243 | 9 | 2243 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I6_15 | HG002complexvar | het | 98.1220 | 96.6454 | 99.6443 | 60.1594 | 2276 | 79 | 2241 | 8 | 3 | 37.5000 | |
| gduggal-snapfb | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 95.6666 | 99.3783 | 92.2222 | 67.1222 | 2238 | 14 | 2241 | 189 | 11 | 5.8201 | |
| ltrigg-rtg1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 99.1434 | 98.6909 | 99.6000 | 82.9235 | 2337 | 31 | 2241 | 9 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | I1_5 | map_siren | * | 83.5106 | 74.6755 | 94.7168 | 75.2199 | 2244 | 761 | 2241 | 125 | 111 | 88.8000 | |
| gduggal-bwafb | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.6440 | 99.4227 | 99.8662 | 57.6502 | 2239 | 13 | 2239 | 3 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | * | map_l100_m2_e0 | het | 97.7908 | 96.8357 | 98.7649 | 83.7444 | 2234 | 73 | 2239 | 28 | 4 | 14.2857 | |
| ltrigg-rtg2 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 98.8441 | 99.5400 | 98.1579 | 64.3471 | 2164 | 10 | 2238 | 42 | 2 | 4.7619 | |
| raldana-dualsentieon | INDEL | I6_15 | HG002complexvar | het | 98.1424 | 96.5605 | 99.7771 | 58.4090 | 2274 | 81 | 2238 | 5 | 4 | 80.0000 | |
| ckim-dragen | INDEL | * | map_l100_m2_e0 | het | 96.2796 | 97.1391 | 95.4352 | 88.1801 | 2241 | 66 | 2237 | 107 | 9 | 8.4112 | |
| dgrover-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 94.8283 | 92.7831 | 96.9658 | 59.2331 | 2237 | 174 | 2237 | 70 | 66 | 94.2857 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 93.3120 | 87.8747 | 99.4664 | 36.3431 | 7182 | 991 | 2237 | 12 | 12 | 100.0000 | |
| jli-custom | INDEL | D16_PLUS | HG002compoundhet | * | 96.5889 | 95.5575 | 97.6430 | 32.3191 | 2237 | 104 | 2237 | 54 | 53 | 98.1481 | |