PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
101-150 / 86044 show all | |||||||||||||||
anovak-vg | SNP | * | * | het | 98.0636 | 98.0936 | 98.0337 | 24.0083 | 1837883 | 35718 | 1828909 | 36684 | 13178 | 35.9230 | |
ckim-isaac | SNP | * | * | het | 98.6547 | 97.3796 | 99.9637 | 16.8583 | 1824505 | 49096 | 1825101 | 663 | 63 | 9.5023 | |
ckim-dragen | SNP | ti | * | het | 99.7466 | 99.9566 | 99.5375 | 22.8315 | 1281335 | 556 | 1281494 | 5955 | 318 | 5.3401 | |
bgallagher-sentieon | SNP | ti | * | het | 99.9232 | 99.9613 | 99.8851 | 18.4052 | 1281395 | 496 | 1281341 | 1474 | 76 | 5.1560 | |
dgrover-gatk | SNP | ti | * | het | 99.9394 | 99.9568 | 99.9221 | 18.8587 | 1281337 | 554 | 1281283 | 999 | 87 | 8.7087 | |
jli-custom | SNP | ti | * | het | 99.9331 | 99.9539 | 99.9123 | 17.4772 | 1281300 | 591 | 1281266 | 1125 | 87 | 7.7333 | |
jlack-gatk | SNP | ti | * | het | 99.6581 | 99.9316 | 99.3861 | 24.9292 | 1281014 | 877 | 1280960 | 7913 | 288 | 3.6396 | |
rpoplin-dv42 | SNP | ti | * | het | 99.9511 | 99.9279 | 99.9742 | 18.1937 | 1280967 | 924 | 1280907 | 330 | 164 | 49.6970 | |
hfeng-pmm3 | SNP | ti | * | het | 99.9388 | 99.9112 | 99.9664 | 17.2454 | 1280753 | 1138 | 1280703 | 430 | 18 | 4.1861 | |
hfeng-pmm2 | SNP | ti | * | het | 99.9215 | 99.8989 | 99.9442 | 17.8405 | 1280595 | 1296 | 1280545 | 715 | 24 | 3.3566 | |
hfeng-pmm1 | SNP | ti | * | het | 99.9312 | 99.8931 | 99.9694 | 16.7684 | 1280521 | 1370 | 1280470 | 392 | 29 | 7.3980 | |
ghariani-varprowl | SNP | ti | * | het | 99.3626 | 99.8721 | 98.8582 | 25.2183 | 1280237 | 1639 | 1280417 | 14789 | 277 | 1.8730 | |
cchapple-custom | SNP | ti | * | het | 99.8339 | 99.8795 | 99.7883 | 21.7295 | 1280346 | 1545 | 1280384 | 2716 | 443 | 16.3108 | |
raldana-dualsentieon | SNP | ti | * | het | 99.9019 | 99.8809 | 99.9229 | 17.7757 | 1280364 | 1527 | 1280313 | 988 | 21 | 2.1255 | |
gduggal-bwafb | SNP | ti | * | het | 99.7363 | 99.8649 | 99.6080 | 22.2231 | 1280165 | 1732 | 1280284 | 5038 | 382 | 7.5824 | |
ltrigg-rtg2 | SNP | ti | * | het | 99.8504 | 99.8647 | 99.8361 | 15.7716 | 1280159 | 1735 | 1280167 | 2101 | 75 | 3.5697 | |
ltrigg-rtg1 | SNP | ti | * | het | 99.8539 | 99.8618 | 99.8460 | 16.3632 | 1280123 | 1771 | 1280140 | 1975 | 52 | 2.6329 | |
gduggal-snapfb | SNP | ti | * | het | 99.2278 | 99.8088 | 98.6535 | 22.6951 | 1279446 | 2451 | 1279980 | 17470 | 996 | 5.7012 | |
egarrison-hhga | SNP | ti | * | het | 99.8877 | 99.8228 | 99.9527 | 17.2025 | 1279619 | 2272 | 1279622 | 606 | 80 | 13.2013 | |
ndellapenna-hhga | SNP | ti | * | het | 99.8668 | 99.7824 | 99.9512 | 16.9483 | 1279102 | 2789 | 1279103 | 624 | 83 | 13.3013 | |
ckim-gatk | SNP | ti | * | het | 99.7182 | 99.6780 | 99.7585 | 24.7182 | 1277763 | 4128 | 1277713 | 3093 | 133 | 4.3000 | |
jmaeng-gatk | SNP | ti | * | het | 99.6655 | 99.6418 | 99.6893 | 25.0371 | 1277299 | 4592 | 1277249 | 3981 | 127 | 3.1902 | |
jpowers-varprowl | SNP | ti | * | het | 99.4145 | 99.3343 | 99.4948 | 22.7953 | 1273353 | 8534 | 1273511 | 6466 | 293 | 4.5314 | |
ckim-vqsr | SNP | ti | * | het | 99.5238 | 99.1280 | 99.9229 | 24.8520 | 1270713 | 11178 | 1270665 | 981 | 62 | 6.3201 | |
qzeng-custom | SNP | ti | * | het | 99.4567 | 99.1981 | 99.7166 | 23.5601 | 1271618 | 10279 | 1269681 | 3608 | 520 | 14.4124 | |
gduggal-snapplat | SNP | ti | * | het | 98.9857 | 98.8246 | 99.1474 | 28.1840 | 1266829 | 15068 | 1267456 | 10899 | 1576 | 14.4600 | |
astatham-gatk | SNP | ti | * | het | 99.3889 | 98.8086 | 99.9762 | 18.5890 | 1266618 | 15273 | 1266563 | 302 | 60 | 19.8675 | |
gduggal-bwavard | SNP | ti | * | het | 99.2556 | 99.0550 | 99.4571 | 24.6552 | 1269783 | 12114 | 1265789 | 6910 | 2002 | 28.9725 | |
eyeh-varpipe | SNP | ti | * | het | 99.6284 | 99.9615 | 99.2976 | 20.5443 | 1281404 | 493 | 1264336 | 8944 | 171 | 1.9119 | |
gduggal-snapvard | SNP | ti | * | het | 98.9307 | 98.9471 | 98.9142 | 25.7701 | 1268399 | 13497 | 1263991 | 13875 | 2046 | 14.7459 | |
gduggal-bwaplat | SNP | ti | * | het | 98.9567 | 98.3966 | 99.5232 | 28.0886 | 1261337 | 20554 | 1261923 | 6046 | 762 | 12.6034 | |
ciseli-custom | SNP | ti | * | het | 97.9524 | 98.4710 | 97.4391 | 21.0644 | 1262297 | 19600 | 1259858 | 33111 | 542 | 1.6369 | |
asubramanian-gatk | SNP | ti | * | het | 99.0688 | 98.2225 | 99.9298 | 21.0842 | 1259105 | 22786 | 1259055 | 884 | 67 | 7.5792 | |
anovak-vg | SNP | ti | * | het | 98.0963 | 98.0413 | 98.1515 | 22.3908 | 1256788 | 25109 | 1253632 | 23610 | 9204 | 38.9835 | |
mlin-fermikit | SNP | ti | * | het | 98.8419 | 97.7886 | 99.9182 | 14.5462 | 1253549 | 28348 | 1253519 | 1026 | 32 | 3.1189 | |
ckim-isaac | SNP | ti | * | het | 98.7325 | 97.5284 | 99.9667 | 15.6908 | 1250214 | 31683 | 1250525 | 417 | 31 | 7.4341 | |
hfeng-pmm2 | SNP | * | * | homalt | 99.9900 | 99.9890 | 99.9910 | 18.1427 | 1180031 | 130 | 1180018 | 106 | 72 | 67.9245 | |
hfeng-pmm3 | SNP | * | * | homalt | 99.9916 | 99.9889 | 99.9942 | 17.9575 | 1180030 | 131 | 1180013 | 68 | 45 | 66.1765 | |
hfeng-pmm1 | SNP | * | * | homalt | 99.9908 | 99.9886 | 99.9929 | 18.0449 | 1180027 | 134 | 1180013 | 84 | 56 | 66.6667 | |
raldana-dualsentieon | SNP | * | * | homalt | 99.9888 | 99.9827 | 99.9949 | 17.0955 | 1179957 | 204 | 1179943 | 60 | 53 | 88.3333 | |
bgallagher-sentieon | SNP | * | * | homalt | 99.9858 | 99.9781 | 99.9936 | 17.1960 | 1179902 | 259 | 1179878 | 76 | 66 | 86.8421 | |
jli-custom | SNP | * | * | homalt | 99.9850 | 99.9771 | 99.9928 | 17.2570 | 1179891 | 270 | 1179875 | 85 | 66 | 77.6471 | |
dgrover-gatk | SNP | * | * | homalt | 99.9839 | 99.9740 | 99.9938 | 17.2643 | 1179854 | 307 | 1179830 | 73 | 63 | 86.3014 | |
jpowers-varprowl | SNP | * | * | homalt | 99.8292 | 99.9606 | 99.6981 | 20.3193 | 1179696 | 465 | 1179822 | 3573 | 2211 | 61.8808 | |
ckim-dragen | SNP | * | * | homalt | 99.9725 | 99.9534 | 99.9917 | 17.1093 | 1179611 | 550 | 1179821 | 98 | 80 | 81.6327 | |
rpoplin-dv42 | SNP | * | * | homalt | 99.9769 | 99.9716 | 99.9821 | 18.2100 | 1179826 | 335 | 1179802 | 211 | 157 | 74.4076 | |
ghariani-varprowl | SNP | * | * | homalt | 99.7891 | 99.9588 | 99.6200 | 19.7823 | 1179670 | 486 | 1179792 | 4500 | 2208 | 49.0667 | |
astatham-gatk | SNP | * | * | homalt | 99.9742 | 99.9548 | 99.9936 | 17.1971 | 1179627 | 534 | 1179603 | 76 | 67 | 88.1579 | |
jlack-gatk | SNP | * | * | homalt | 99.9692 | 99.9511 | 99.9872 | 17.3366 | 1179584 | 577 | 1179556 | 151 | 96 | 63.5762 | |
ltrigg-rtg2 | SNP | * | * | homalt | 99.9694 | 99.9515 | 99.9872 | 17.0159 | 1179585 | 572 | 1179505 | 151 | 139 | 92.0530 |