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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 291 292 293 294 295 296 297 298 299 ... 1720 1721 » 14701-14750 / 86044 show all
jpowers-varprowl	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	98.5525	99.0160	98.0933	59.8338	2415	24	2418	47	12	25.5319
qzeng-custom	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	95.5560	97.8984	93.3230	31.2914	559	12	2418	173	165	95.3757
gduggal-snapvard	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	het	95.2200	98.0630	92.5373	51.0491	2430	48	2418	195	3	1.5385
gduggal-bwafb	SNP	*	map_l250_m1_e0	homalt	98.9560	98.1324	99.7936	88.2570	2417	46	2417	5	5	100.0000
mlin-fermikit	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	86.9863	88.6640	85.3710	87.2287	2409	308	2416	414	264	63.7681
ckim-dragen	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	96.6886	93.6983	99.8760	34.6569	2379	160	2416	3	3	100.0000
ghariani-varprowl	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	95.4729	99.6276	91.6509	80.5506	2408	9	2415	220	130	59.0909
jpowers-varprowl	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	94.4831	99.6276	89.8438	81.7577	2408	9	2415	273	131	47.9853
ciseli-custom	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	50.1218	86.1980	35.3337	81.4035	2342	375	2414	4418	249	5.6360
ckim-isaac	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	96.7262	94.6148	98.9340	44.5934	2407	137	2413	26	2	7.6923
eyeh-varpipe	INDEL	I6_15	*	hetalt	42.6506	27.4354	95.7540	48.5714	2346	6205	2413	107	106	99.0654
qzeng-custom	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	90.2790	82.8456	99.1780	30.0661	9200	1905	2413	20	17	85.0000
cchapple-custom	INDEL	*	map_l100_m2_e0	het	95.1944	96.5756	93.8521	85.6721	2228	79	2412	158	40	25.3165
ckim-gatk	SNP	ti	map_l125_m0_e0	homalt	69.8436	53.6851	99.9171	79.2054	2411	2080	2411	2	1	50.0000
qzeng-custom	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	95.6210	97.3818	93.9229	89.2161	2306	62	2411	156	50	32.0513
raldana-dualsentieon	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	91.5440	84.4657	99.9171	36.7662	2300	423	2411	2	2	100.0000
jli-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.8135	99.6690	99.9585	74.2163	2409	8	2409	1	1	100.0000
jmaeng-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.8342	99.6690	100.0000	72.9599	2409	8	2409	0	0
raldana-dualsentieon	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.8135	99.6690	99.9585	72.5387	2409	8	2409	1	1	100.0000
rpoplin-dv42	SNP	*	map_l250_m1_e0	homalt	98.6481	97.7670	99.5453	86.6597	2408	55	2408	11	11	100.0000
hfeng-pmm2	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	96.5801	93.4226	99.9585	35.8626	2372	167	2408	1	1	100.0000
cchapple-custom	INDEL	D16_PLUS	HG002compoundhet	*	93.0802	91.6275	94.5797	31.0588	2145	196	2408	138	135	97.8261
ckim-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.7720	99.5863	99.9585	72.9893	2407	10	2407	1	1	100.0000
hfeng-pmm1	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.7927	99.5863	100.0000	78.9598	2407	10	2407	0	0
mlin-fermikit	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	98.8303	98.7700	98.8907	49.1114	2409	30	2407	27	22	81.4815
bgallagher-sentieon	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.7720	99.5863	99.9585	72.8523	2407	10	2407	1	1	100.0000
dgrover-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.7720	99.5863	99.9585	73.0075	2407	10	2407	1	1	100.0000
mlin-fermikit	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	95.0423	99.4621	90.9985	80.5588	2404	13	2406	238	191	80.2521
rpoplin-dv42	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.6890	99.4621	99.9169	79.7698	2404	13	2406	2	1	50.0000
hfeng-pmm2	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.7512	99.5449	99.9585	79.2911	2406	11	2406	1	0	0.0000
hfeng-pmm3	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.7512	99.5449	99.9585	78.7236	2406	11	2406	1	0	0.0000
eyeh-varpipe	INDEL	I6_15	HG002compoundhet	hetalt	42.7960	27.4218	97.4089	29.0841	2341	6196	2406	64	63	98.4375
ckim-isaac	INDEL	*	HG002compoundhet	het	56.9247	80.6302	43.9912	64.9439	3301	793	2405	3062	2738	89.4187
ciseli-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	86.4900	97.9500	77.4308	59.1746	2389	50	2405	701	19	2.7104
anovak-vg	INDEL	*	map_siren	homalt	77.1234	89.6798	67.6512	75.5300	2381	274	2405	1150	1080	93.9130
astatham-gatk	SNP	*	map_l250_m1_e0	homalt	98.6256	97.6045	99.6683	85.3151	2404	59	2404	8	7	87.5000
astatham-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.7097	99.4621	99.9584	72.8647	2404	13	2404	1	1	100.0000
jlack-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.6683	99.4621	99.8754	72.2887	2404	13	2404	3	3	100.0000
jlack-gatk	SNP	*	map_l250_m1_e0	homalt	98.5442	97.5639	99.5443	85.9993	2403	60	2403	11	8	72.7273
ckim-vqsr	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	96.3956	93.1863	99.8338	31.7550	2366	173	2403	4	4	100.0000
ckim-vqsr	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.6889	99.4208	99.9584	73.0221	2403	14	2403	1	1	100.0000
ltrigg-rtg2	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	98.0229	97.8447	98.2019	70.5216	2406	53	2403	44	6	13.6364
astatham-gatk	SNP	tv	map_l150_m0_e0	het	91.2506	84.5586	99.0928	85.6322	2404	439	2403	22	3	13.6364
ckim-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	96.3956	93.1863	99.8338	31.7550	2366	173	2403	4	4	100.0000
cchapple-custom	INDEL	D16_PLUS	HG002compoundhet	het	95.2281	95.0617	95.3950	30.7967	385	20	2403	116	113	97.4138
gduggal-bwavard	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	50.3306	47.8296	53.1077	74.2686	2391	2608	2401	2120	1904	89.8113
gduggal-bwavard	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	50.3306	47.8296	53.1077	74.2686	2391	2608	2401	2120	1904	89.8113
ckim-dragen	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.2515	98.6760	99.8336	71.5436	2385	32	2400	4	4	100.0000
gduggal-snapplat	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	*	80.9810	69.4783	97.0481	57.6686	2397	1053	2400	73	9	12.3288
qzeng-custom	INDEL	*	map_l100_m2_e0	het	83.5804	79.9740	87.5274	89.7430	1845	462	2400	342	54	15.7895

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