PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TP Query FPFP gt% FP ma
14601-14650 / 86044 show all
hfeng-pmm3SNP*map_l250_m1_e0homalt
99.4527
99.5940
99.3117
86.9423
2453102453176
35.2941
hfeng-pmm3SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
94.5603
90.2098
99.3517
87.1432
24512662452164
25.0000
jlack-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
95.3785
91.3011
99.8371
36.7431
2414230245143
75.0000
gduggal-snapfbINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50*
76.0659
65.5275
90.6435
34.5437
241612712451253251
99.2095
gduggal-snapplatSNPtvmap_l150_m0_e0het
88.2289
86.2117
90.3428
90.9621
24513922451262132
50.3817
ltrigg-rtg1SNP*map_l250_m1_e0homalt
99.6340
99.4722
99.7963
86.3079
245013245055
100.0000
anovak-vgSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
96.7969
96.8324
96.7615
60.7624
24157924508232
39.0244
ltrigg-rtg2SNP*map_l250_m1_e0homalt
99.6541
99.4316
99.8777
84.3152
244914244933
100.0000
gduggal-snapfbINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
83.9960
76.5257
93.0825
45.8976
711021812449182112
61.5385
gduggal-snapfbINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
83.9960
76.5257
93.0825
45.8976
711021812449182112
61.5385
gduggal-snapvardSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
88.5779
97.0912
81.4371
71.0683
24707424485588
1.4337
mlin-fermikitINDELI16_PLUS*het
86.1646
90.3606
82.3411
68.6094
24562622448525508
96.7619
qzeng-customINDEL*map_sirenhomalt
90.9652
86.4030
96.0361
77.3592
2294361244710123
22.7723
hfeng-pmm1SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
94.5883
90.0626
99.5930
87.0976
24472702447104
40.0000
hfeng-pmm1INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
92.7289
88.8607
96.9493
47.5369
244930724477775
97.4026
jli-customINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
97.3586
95.0374
99.7961
32.0399
2413126244755
100.0000
asubramanian-gatkSNPtilowcmp_SimpleRepeat_triTR_11to50het
99.2697
98.7490
99.7960
33.5412
244731244650
0.0000
eyeh-varpipeSNPtiHG002compoundhethomalt
97.1981
99.5131
94.9883
44.4780
735836244512950
38.7597
anovak-vgSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
80.3087
86.8666
74.6716
81.1723
20573112444829438
52.8347
ckim-dragenSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.9182
99.9590
99.8774
49.7020
24381244430
0.0000
jmaeng-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
92.0778
85.6776
99.5114
35.1466
233339024441212
100.0000
hfeng-pmm3INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
92.2342
85.6776
99.8774
37.7987
2333390244433
100.0000
hfeng-pmm2SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
94.3952
89.8785
99.3897
87.2026
24422752443153
20.0000
gduggal-bwavardINDELI1_5lowcmp_SimpleRepeat_quadTR_11to50*
72.0146
63.6573
82.8979
66.4923
248214172443504406
80.5556
ckim-isaacSNPtvmap_l125_m0_e0het
71.3076
55.5101
99.6736
79.7505
24431958244381
12.5000
mlin-fermikitINDELD6_15lowcmp_SimpleRepeat_diTR_11to50het
81.7820
89.5719
75.2387
54.8652
24482852443804793
98.6318
mlin-fermikitSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
98.9886
98.1155
99.8774
55.5677
244747244331
33.3333
gduggal-snapfbINDELD6_15HG002complexvarhet
75.2635
62.8205
93.8532
43.4007
196011602443160143
89.3750
cchapple-customINDELC1_5**
93.0765
90.0000
96.3708
91.7847
9124439225
27.1739
ciseli-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
77.9136
81.0000
75.0538
73.8785
24305702443812202
24.8768
egarrison-hhgaSNP*map_l250_m1_e0homalt
99.4705
99.1474
99.7957
86.3912
244221244255
100.0000
hfeng-pmm3INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
92.5922
88.6792
96.8663
47.5010
244431224427977
97.4684
raldana-dualsentieonSNP*map_l250_m1_e0homalt
99.4502
99.1474
99.7549
84.1101
244221244263
50.0000
gduggal-bwavardSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
91.3850
94.7826
88.2225
88.3133
2507138244232684
25.7669
eyeh-varpipeSNPtilowcmp_SimpleRepeat_triTR_11to50het
98.7872
99.8789
97.7191
41.8567
247532442574
7.0175
gduggal-snapfbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
79.3964
87.2325
72.8520
53.8546
24463582442910909
99.8901
astatham-gatkSNPtilowcmp_SimpleRepeat_triTR_11to50het
99.2683
98.5472
100.0000
30.9086
244236244100
cchapple-customINDELC1_5HG002complexvar*
91.1355
85.7143
97.2887
77.3646
6124406825
36.7647
ckim-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.8976
100.0000
99.7954
52.3680
24390243950
0.0000
bgallagher-sentieonSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.8976
100.0000
99.7954
50.4360
24390243950
0.0000
dgrover-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.8771
100.0000
99.7546
51.5937
24390243960
0.0000
ckim-vqsrSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.9181
100.0000
99.8363
52.3782
24390243940
0.0000
jlack-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.7138
100.0000
99.4293
53.4182
243902439140
0.0000
ciseli-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
51.7623
87.4465
36.7612
44.5578
2452352243841943961
94.4444
ckim-dragenSNP*map_l250_m1_e0homalt
99.1258
98.9850
99.2671
82.5332
24382524381815
83.3333
rpoplin-dv42INDEL*lowcmp_SimpleRepeat_quadTR_51to200*
94.2145
93.1450
95.3088
77.7623
2473182243812091
75.8333
jpowers-varprowlINDELD6_15lowcmp_SimpleRepeat_diTR_11to50het
50.2642
88.4376
35.1094
44.6429
2417316243845064477
99.3564
mlin-fermikitINDEL*map_l100_m2_e0*
75.2930
65.9626
87.6978
80.5947
243612572438342265
77.4854
gduggal-snapfbSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
86.3847
99.0570
76.5871
59.4598
241623243774518
2.4161
bgallagher-sentieonSNP*map_l250_m1_e0homalt
99.2870
98.9444
99.6321
85.1090
243726243797
77.7778