PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
14551-14600 / 86044 show all | |||||||||||||||
| bgallagher-sentieon | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.7984 | 99.9193 | 99.6778 | 30.7392 | 2476 | 2 | 2475 | 8 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | het | 95.2283 | 99.5561 | 91.2611 | 45.6295 | 2467 | 11 | 2475 | 237 | 8 | 3.3755 | |
| rpoplin-dv42 | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.8991 | 99.8789 | 99.9192 | 29.1154 | 2475 | 3 | 2474 | 2 | 1 | 50.0000 | |
| raldana-dualsentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.4171 | 99.1580 | 99.6775 | 58.2394 | 2473 | 21 | 2473 | 8 | 0 | 0.0000 | |
| ndellapenna-hhga | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.4571 | 99.1580 | 99.7580 | 57.7755 | 2473 | 21 | 2473 | 6 | 0 | 0.0000 | |
| hfeng-pmm3 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.5772 | 99.1580 | 100.0000 | 57.3253 | 2473 | 21 | 2473 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 92.9325 | 86.8895 | 99.8788 | 38.1155 | 2366 | 357 | 2473 | 3 | 3 | 100.0000 | |
| bgallagher-sentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 92.6115 | 86.6324 | 99.4771 | 37.4276 | 2359 | 364 | 2473 | 13 | 12 | 92.3077 | |
| dgrover-gatk | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.8385 | 99.8386 | 99.8385 | 31.8944 | 2474 | 4 | 2473 | 4 | 0 | 0.0000 | |
| cchapple-custom | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.6976 | 99.7579 | 99.6374 | 34.5809 | 2472 | 6 | 2473 | 9 | 3 | 33.3333 | |
| ckim-gatk | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.8184 | 99.8386 | 99.7982 | 36.6402 | 2474 | 4 | 2473 | 5 | 1 | 20.0000 | |
| hfeng-pmm1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.5570 | 99.1179 | 100.0000 | 57.0236 | 2472 | 22 | 2472 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 96.8189 | 94.9153 | 98.8005 | 65.6974 | 2520 | 135 | 2471 | 30 | 22 | 73.3333 | |
| ltrigg-rtg2 | SNP | tv | map_l250_m1_e0 | * | 96.5840 | 93.4643 | 99.9191 | 77.8524 | 2474 | 173 | 2471 | 2 | 0 | 0.0000 | |
| ghariani-varprowl | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | het | 98.2105 | 99.3947 | 97.0542 | 49.5042 | 2463 | 15 | 2471 | 75 | 0 | 0.0000 | |
| gduggal-bwafb | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.1968 | 99.5561 | 98.8400 | 40.7302 | 2467 | 11 | 2471 | 29 | 6 | 20.6897 | |
| jli-custom | INDEL | I16_PLUS | * | het | 95.1311 | 91.7586 | 98.7610 | 68.1314 | 2494 | 224 | 2471 | 31 | 8 | 25.8065 | |
| jlack-gatk | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.4965 | 99.7175 | 99.2765 | 38.0786 | 2471 | 7 | 2470 | 18 | 1 | 5.5556 | |
| jmaeng-gatk | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.7576 | 99.6772 | 99.8383 | 36.6060 | 2470 | 8 | 2469 | 4 | 0 | 0.0000 | |
| jpowers-varprowl | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 98.3066 | 98.7971 | 97.8209 | 68.6304 | 2464 | 30 | 2469 | 55 | 1 | 1.8182 | |
| mlin-fermikit | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 95.2465 | 93.1191 | 97.4734 | 81.1308 | 2463 | 182 | 2469 | 64 | 5 | 7.8125 | |
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 92.4949 | 86.3386 | 99.5964 | 37.6133 | 2351 | 372 | 2468 | 10 | 10 | 100.0000 | |
| ltrigg-rtg1 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.6765 | 99.9590 | 99.3956 | 49.5528 | 2438 | 1 | 2467 | 15 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 96.6238 | 94.6516 | 98.6800 | 66.1797 | 2513 | 142 | 2467 | 33 | 25 | 75.7576 | |
| gduggal-snapplat | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | het | 77.5375 | 77.3507 | 77.7253 | 87.2862 | 2435 | 713 | 2467 | 707 | 54 | 7.6379 | |
| hfeng-pmm3 | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.7776 | 99.5561 | 100.0000 | 29.2802 | 2467 | 11 | 2466 | 0 | 0 | ||
| hfeng-pmm2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.3754 | 98.8773 | 99.8785 | 57.1429 | 2466 | 28 | 2466 | 3 | 0 | 0.0000 | |
| hfeng-pmm1 | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.7169 | 99.5157 | 99.9189 | 27.4838 | 2466 | 12 | 2465 | 2 | 0 | 0.0000 | |
| hfeng-pmm2 | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.6765 | 99.4754 | 99.8784 | 28.4513 | 2465 | 13 | 2464 | 3 | 0 | 0.0000 | |
| ciseli-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 62.8906 | 92.3251 | 47.6872 | 81.6922 | 2442 | 203 | 2464 | 2703 | 33 | 1.2209 | |
| ndellapenna-hhga | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.6764 | 99.4350 | 99.9189 | 28.6252 | 2464 | 14 | 2464 | 2 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.5944 | 99.7950 | 99.3947 | 49.7872 | 2434 | 5 | 2463 | 15 | 0 | 0.0000 | |
| qzeng-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.0167 | 99.6391 | 98.4019 | 66.3620 | 2485 | 9 | 2463 | 40 | 1 | 2.5000 | |
| raldana-dualsentieon | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.6360 | 99.4350 | 99.8379 | 27.9708 | 2464 | 14 | 2463 | 4 | 0 | 0.0000 | |
| egarrison-hhga | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.5956 | 99.3947 | 99.7973 | 28.9459 | 2463 | 15 | 2462 | 5 | 1 | 20.0000 | |
| hfeng-pmm1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 92.5950 | 86.3019 | 99.8782 | 37.9441 | 2350 | 373 | 2460 | 3 | 3 | 100.0000 | |
| ghariani-varprowl | INDEL | I16_PLUS | * | het | 73.3265 | 90.1398 | 61.7994 | 65.3970 | 2450 | 268 | 2459 | 1520 | 1502 | 98.8158 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 96.1174 | 96.1050 | 96.1298 | 45.0129 | 2196 | 89 | 2459 | 99 | 35 | 35.3535 | |
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 92.9369 | 89.2961 | 96.8873 | 47.7240 | 2461 | 295 | 2459 | 79 | 77 | 97.4684 | |
| eyeh-varpipe | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 96.1521 | 99.7642 | 92.7925 | 63.8373 | 2538 | 6 | 2459 | 191 | 10 | 5.2356 | |
| qzeng-custom | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.4125 | 98.9911 | 99.8375 | 43.7900 | 2453 | 25 | 2458 | 4 | 1 | 25.0000 | |
| raldana-dualsentieon | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 96.1443 | 94.3879 | 97.9673 | 65.1092 | 2506 | 149 | 2458 | 51 | 44 | 86.2745 | |
| raldana-dualsentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 94.6821 | 90.4306 | 99.3530 | 87.4575 | 2457 | 260 | 2457 | 16 | 11 | 68.7500 | |
| jpowers-varprowl | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.1706 | 98.8297 | 99.5138 | 43.4464 | 2449 | 29 | 2456 | 12 | 0 | 0.0000 | |
| ciseli-custom | INDEL | * | map_l100_m2_e0 | * | 70.8083 | 66.3417 | 75.9196 | 88.0680 | 2450 | 1243 | 2456 | 779 | 514 | 65.9820 | |
| ckim-vqsr | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.5138 | 99.1122 | 99.9186 | 36.8380 | 2456 | 22 | 2455 | 2 | 1 | 50.0000 | |
| cchapple-custom | INDEL | * | map_l100_m2_e1 | het | 95.2316 | 96.5856 | 93.9150 | 85.7416 | 2263 | 80 | 2454 | 159 | 41 | 25.7862 | |
| hfeng-pmm2 | SNP | * | map_l250_m1_e0 | homalt | 99.4730 | 99.6346 | 99.3120 | 87.0152 | 2454 | 9 | 2454 | 17 | 6 | 35.2941 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 93.8486 | 89.4412 | 98.7128 | 45.6849 | 2465 | 291 | 2454 | 32 | 30 | 93.7500 | |
| hfeng-pmm1 | SNP | * | map_l250_m1_e0 | homalt | 99.4527 | 99.5940 | 99.3117 | 86.9979 | 2453 | 10 | 2453 | 17 | 6 | 35.2941 | |