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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TP Query FPFP gt% FP ma
13901-13950 / 86044 show all
qzeng-customSNPtimap_l125_m0_e0homalt
76.3240
61.9906
99.2790
71.5020
2784170727542019
95.0000
mlin-fermikitSNPtvlowcmp_SimpleRepeat_quadTR_11to50homalt
98.1641
99.7099
96.6655
41.7144
2750827549583
87.3684
gduggal-snapvardINDEL*map_l125_m2_e0*
85.9487
92.0310
80.6206
88.8530
20211752754662269
40.6344
ndellapenna-hhgaINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
94.8193
92.4187
97.3479
49.5090
275522627537552
69.3333
astatham-gatkSNPtvlowcmp_SimpleRepeat_quadTR_11to50homalt
99.8911
99.7825
100.0000
36.2077
27526275200
ckim-gatkSNP*map_l250_m1_e0het
72.2025
57.8759
95.9554
96.7153
2752200327521169
7.7586
gduggal-bwaplatINDELD1_5map_siren*
87.3512
77.9824
99.2785
89.5187
27527772752207
35.0000
hfeng-pmm3SNPtimap_l150_m0_e0homalt
99.6199
99.6740
99.5658
75.7331
275292752124
33.3333
hfeng-pmm1SNPtimap_l150_m0_e0homalt
99.6199
99.6740
99.5658
75.8370
275292752124
33.3333
hfeng-pmm2SNPtimap_l150_m0_e0homalt
99.6019
99.6740
99.5298
75.8368
275292752135
38.4615
gduggal-bwavardINDELI1_5map_siren*
93.4444
92.8453
94.0513
82.2555
27902152751174115
66.0920
gduggal-bwafbINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
80.6843
72.0726
91.6333
55.4102
13115082749251244
97.2112
gduggal-bwafbINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331het
80.6843
72.0726
91.6333
55.4102
13115082749251244
97.2112
egarrison-hhgaSNPtimap_l150_m0_e0homalt
99.7098
99.5654
99.8547
73.4497
274912274944
100.0000
ltrigg-rtg1SNPtvmap_l250_m2_e0*
97.5357
95.4545
99.7097
82.4960
2751131274883
37.5000
ndellapenna-hhgaINDELD16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_merged*
82.5216
75.5967
90.8430
68.5420
26928692748277196
70.7581
gduggal-snapfbSNPtvlowcmp_SimpleRepeat_quadTR_11to50homalt
98.2657
99.6737
96.8970
47.8485
2749927488817
19.3182
jmaeng-gatkSNPtvlowcmp_SimpleRepeat_quadTR_11to50homalt
99.8002
99.6012
100.0000
36.4268
274711274700
gduggal-snapfbSNPtvmap_l250_m2_e0*
94.8696
95.2811
94.4616
90.2325
2746136274616155
34.1615
ckim-gatkSNPtvlowcmp_SimpleRepeat_quadTR_11to50homalt
99.7820
99.5649
100.0000
36.1989
274612274600
cchapple-customSNPtvlowcmp_SimpleRepeat_quadTR_11to50homalt
99.9456
99.8912
100.0000
31.5724
27553274600
ltrigg-rtg1SNPtvlowcmp_SimpleRepeat_quadTR_11to50homalt
99.8184
99.8912
99.7456
35.4899
27553274571
14.2857
eyeh-varpipeINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
61.6432
97.7532
45.0148
36.4990
274163274533533280
97.8228
gduggal-bwafbSNPtvlowcmp_SimpleRepeat_quadTR_11to50homalt
99.6007
99.4924
99.7093
41.1337
274414274485
62.5000
jmaeng-gatkSNP*map_l250_m1_e0het
72.0683
57.7077
95.9441
96.8258
2744201127441168
6.8966
ndellapenna-hhgaSNPtvmap_l150_m0_e0het
97.8428
96.5178
99.2046
78.4007
27449927442210
45.4545
egarrison-hhgaSNPtvlowcmp_SimpleRepeat_quadTR_11to50homalt
99.6549
99.4561
99.8544
38.0748
274315274344
100.0000
jli-customSNPtimap_l150_m0_e0homalt
99.6006
99.3481
99.8544
71.0140
274318274344
100.0000
ltrigg-rtg1SNPtimap_l150_m0_e0homalt
99.5282
99.3481
99.7091
74.5205
274318274288
100.0000
qzeng-customINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
89.6938
81.4584
99.7817
61.4370
48371101274265
83.3333
bgallagher-sentieonSNPtimap_l150_m0_e0homalt
99.5462
99.3118
99.7817
72.6486
274219274265
83.3333
gduggal-bwaplatSNP*lowcmp_SimpleRepeat_diTR_11to50homalt
88.1535
79.4790
98.9534
72.5834
274670927422925
86.2069
gduggal-snapvardSNPtvmap_l250_m2_e0*
84.9127
95.5933
76.3788
91.3348
2755127274284831
3.6557
gduggal-snapplatSNP*lowcmp_SimpleRepeat_diTR_11to50homalt
86.0618
78.8133
94.7787
77.2212
2723732274115173
48.3444
gduggal-snapfbSNPtvmap_l150_m0_e0het
94.5988
96.4122
92.8523
78.6628
2741102274121184
39.8104
cchapple-customSNPtvmap_l150_m0_e0het
94.6151
96.4122
92.8838
85.0097
2741102274121043
20.4762
ndellapenna-hhgaSNPtimap_l150_m0_e0homalt
99.5641
99.2756
99.8543
71.8779
274120274144
100.0000
ndellapenna-hhgaSNPtvlowcmp_SimpleRepeat_quadTR_11to50homalt
99.4376
99.3474
99.5280
38.8679
27401827411313
100.0000
ltrigg-rtg2SNPtvlowcmp_SimpleRepeat_quadTR_11to50homalt
99.8729
99.7825
99.9635
34.6365
27526274111
100.0000
qzeng-customINDELI16_PLUS*het
85.2063
89.5879
81.2333
62.0542
24352832740633156
24.6445
jpowers-varprowlSNP*lowcmp_SimpleRepeat_triTR_11to50homalt
98.8278
100.0000
97.6827
39.6904
2738027406542
64.6154
ghariani-varprowlSNP*lowcmp_SimpleRepeat_triTR_11to50homalt
98.8634
100.0000
97.7524
37.9730
2738027406341
65.0794
egarrison-hhgaINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
94.7466
91.9826
97.6819
48.8321
274223927396551
78.4615
raldana-dualsentieonSNPtimap_l150_m0_e0homalt
99.4913
99.1670
99.8177
71.1111
273823273854
80.0000
ltrigg-rtg2SNPtimap_l150_m0_e0homalt
99.5276
99.2032
99.8541
71.1520
273922273844
100.0000
gduggal-snapvardSNPtvmap_l150_m0_e0het
83.5823
96.6936
73.6022
87.1311
274994273898241
4.1752
ltrigg-rtg2SNPtimap_l250_m1_e0het
95.8290
92.1159
99.8541
75.2192
2734234273741
25.0000
hfeng-pmm2SNP*lowcmp_SimpleRepeat_triTR_11to50homalt
99.9452
99.9635
99.9270
33.2602
27371273721
50.0000
hfeng-pmm3SNP*lowcmp_SimpleRepeat_triTR_11to50homalt
99.9452
99.9635
99.9270
31.7808
27371273721
50.0000
hfeng-pmm1SNP*lowcmp_SimpleRepeat_triTR_11to50homalt
99.9452
99.9270
99.9635
32.6526
27362273611
100.0000