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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TP Query FPFP gt% FP ma
12651-12700 / 86044 show all
ndellapenna-hhgaINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
93.7883
91.0957
96.6448
54.7687
3550347354312390
73.1707
ckim-isaacSNPtimap_l150_m1_e0homalt
65.1458
48.3281
99.9153
66.1412
35413786354133
100.0000
jli-customINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
95.3300
94.5545
96.1183
76.3193
38202203541143117
81.8182
cchapple-customINDELD16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_merged*
96.8519
95.9843
97.7354
64.7626
341814335398270
85.3659
cchapple-customINDEL*map_l100_m1_e0*
95.9601
96.4584
95.4668
83.7178
3459127353816848
28.5714
ndellapenna-hhgaINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
98.1272
97.5987
98.6615
84.6994
35368735384830
62.5000
ckim-gatkINDEL*map_l100_m1_e0*
97.0622
98.4384
95.7240
88.3725
353056353715820
12.6582
hfeng-pmm2INDEL*map_l100_m1_e0*
98.3031
98.4384
98.1682
84.3925
35305635376613
19.6970
ndellapenna-hhgaINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
94.3311
97.1963
91.6300
59.5874
35361023536323127
39.3189
mlin-fermikitINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50homalt
96.5901
96.7267
96.4539
49.3016
35461203536130124
95.3846
mlin-fermikitINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
91.3183
97.0313
86.2405
69.6055
35301083535564553
98.0496
gduggal-snapplatSNPtvmap_l150_m2_e1homalt
92.2034
85.5346
100.0000
76.0404
3536598353500
cchapple-customINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
97.6012
95.7537
99.5214
52.8600
9024035351715
88.2353
dgrover-gatkINDEL*map_l100_m1_e0*
98.3431
98.3826
98.3037
85.8553
35285835356116
26.2295
egarrison-hhgaINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
95.5535
97.1688
93.9910
58.3407
3535103353522668
30.0885
asubramanian-gatkSNPtvmap_l125_m2_e1het
50.1525
33.4976
99.7460
93.1412
35357018353492
22.2222
jli-customINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.5913
99.8586
99.3255
71.8824
3532535342424
100.0000
dgrover-gatkINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.5071
99.8869
99.1302
72.8167
3533435333131
100.0000
bgallagher-sentieonINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.2834
99.8869
98.6872
72.6216
3533435334747
100.0000
ckim-gatkINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.5071
99.8869
99.1302
72.7419
3533435333131
100.0000
ckim-dragenINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.2414
99.9435
98.5491
72.6182
3535235325252
100.0000
hfeng-pmm3INDEL*map_l100_m1_e0*
98.6300
98.2989
98.9633
82.3910
3525613532379
24.3243
astatham-gatkINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.4789
99.8586
99.1021
72.7252
3532535323232
100.0000
ckim-vqsrINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.5070
99.8586
99.1578
72.7530
3532535323030
100.0000
jmaeng-gatkINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.4228
99.8304
99.0185
72.8574
3531635313534
97.1429
raldana-dualsentieonINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.3948
99.8304
98.9630
72.1359
3531635313737
100.0000
gduggal-bwaplatINDEL*map_sirenhet
87.4010
78.3274
98.8522
90.8215
353197735314115
36.5854
asubramanian-gatkINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
92.1790
86.6893
98.4109
40.6421
331550935305749
85.9649
gduggal-snapfbINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
70.1273
67.6890
72.7479
71.4311
3465165435291322311
23.5250
hfeng-pmm2INDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.5485
99.7455
99.3523
71.7771
3528935282322
95.6522
jlack-gatkINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
98.9618
99.7173
98.2178
72.3769
35271035276463
98.4375
ltrigg-rtg1INDEL*map_l100_m2_e0*
97.3361
95.4779
99.2680
80.2721
35261673526267
26.9231
jli-customINDEL*map_l100_m1_e0*
98.4897
98.1595
98.8222
83.0077
35206635244215
35.7143
hfeng-pmm3INDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.5480
99.6325
99.4637
71.3697
35241335241919
100.0000
hfeng-pmm1INDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.5198
99.6042
99.4355
71.4918
35231435232020
100.0000
hfeng-pmm1INDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_merged*
93.4040
89.7684
97.3466
51.5533
352740235229690
93.7500
jmaeng-gatkINDEL*map_l100_m1_e0*
96.9028
98.0201
95.8107
88.4970
351571352215421
13.6364
jlack-gatkINDEL*map_l100_m1_e0*
95.3278
97.9922
92.8044
87.6441
351472352127326
9.5238
astatham-gatkINDEL*map_l100_m2_e0*
96.5801
95.1530
98.0507
86.7138
351417935217018
25.7143
egarrison-hhgaINDELD6_15*hetalt
65.0139
48.4952
98.5994
42.7885
3964421035205043
86.0000
hfeng-pmm2INDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_merged*
93.2754
89.6920
97.1571
51.8026
3524405352010396
93.2039
bgallagher-sentieonINDELD1_5map_siren*
99.2660
99.4899
99.0431
81.6382
3511183519346
17.6471
jlack-gatkINDELI1_5lowcmp_SimpleRepeat_diTR_11to50hetalt
95.6728
91.8003
99.8864
30.0913
3493312351843
75.0000
mlin-fermikitINDEL*lowcmp_SimpleRepeat_triTR_11to50het
94.9292
96.3368
93.5621
42.6632
35241343517242235
97.1074
gduggal-bwafbINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
92.5413
96.7290
88.7011
66.3212
35191193517448445
99.3304
egarrison-hhgaINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
93.6530
90.3259
97.2345
54.0242
3520377351610081
81.0000
gduggal-bwafbINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331*
78.6020
69.2502
90.8738
58.9733
437819443515353342
96.8839
gduggal-bwafbINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
78.6020
69.2502
90.8738
58.9733
437819443515353342
96.8839
hfeng-pmm2INDELD1_5map_siren*
99.1528
99.3483
98.9580
80.2591
3506233514376
16.2162
hfeng-pmm3INDELD1_5map_siren*
99.3769
99.3199
99.4339
78.1455
3505243513205
25.0000