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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TP Query FPFP gt% FP ma
11951-12000 / 86044 show all
ghariani-varprowlINDELD6_15*homalt
74.2367
61.6503
93.2807
52.1893
390024263901281242
86.1210
ghariani-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
37.9377
35.2193
41.1108
54.0150
39037179390155885544
99.2126
gduggal-snapfbSNPtilowcmp_SimpleRepeat_triTR_11to50*
96.6308
99.6416
93.7966
43.2141
389214390125811
4.2636
ghariani-varprowlSNPtilowcmp_SimpleRepeat_triTR_11to50*
98.6463
99.5904
97.7199
44.7612
3890163900919
9.8901
rpoplin-dv42SNPtilowcmp_SimpleRepeat_triTR_11to50*
99.8976
99.8720
99.9231
28.9976
39015390032
66.6667
jpowers-varprowlINDELD6_15*homalt
74.3238
61.6345
93.5925
52.0152
389924273900267242
90.6367
bgallagher-sentieonSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.7825
99.6169
99.9487
75.9091
390015390022
100.0000
anovak-vgSNPtilowcmp_SimpleRepeat_quadTR_11to50homalt
97.7147
97.4166
98.0146
32.9344
388410339007974
93.6709
dgrover-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.7953
99.6169
99.9744
76.0807
390015390011
100.0000
dgrover-gatkSNPtilowcmp_SimpleRepeat_triTR_11to50*
99.8720
99.8720
99.8720
30.2429
39015390051
20.0000
eyeh-varpipeSNPtvmap_l150_m1_e0homalt
99.7710
99.7212
99.8208
74.4574
393511390073
42.8571
eyeh-varpipeINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
52.9384
36.4654
96.5577
59.1585
338859033899139129
92.8058
eyeh-varpipeINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
52.9384
36.4654
96.5577
59.1585
338859033899139129
92.8058
ckim-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.7697
99.5913
99.9487
76.0057
389916389922
100.0000
rpoplin-dv42SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.7185
99.5147
99.9231
80.8305
389619389831
33.3333
hfeng-pmm2SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.7569
99.5658
99.9487
80.8702
389817389820
0.0000
astatham-gatkSNPtvmap_l150_m1_e0homalt
99.2995
98.7836
99.8207
68.8894
389848389875
71.4286
hfeng-pmm1SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.7696
99.5402
100.0000
80.2993
389718389700
jlack-gatkSNPtilowcmp_SimpleRepeat_triTR_11to50*
99.6292
99.7696
99.4893
34.4273
389793896203
15.0000
ltrigg-rtg1SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.5123
99.0294
100.0000
77.4811
387738389600
rpoplin-dv42SNPtvmap_l150_m1_e0homalt
99.2485
98.7329
99.7695
71.6659
389650389699
100.0000
hfeng-pmm3SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.5146
99.0842
99.9487
54.1691
389536389520
0.0000
hfeng-pmm3SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.7311
99.4891
99.9743
79.8583
389520389510
0.0000
qzeng-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
98.6961
99.6184
97.7906
64.7616
3916153895883
3.4091
ckim-gatkSNPtilowcmp_SimpleRepeat_triTR_11to50*
99.7823
99.7440
99.8206
33.3561
389610389573
42.8571
cchapple-customSNPtilowcmp_SimpleRepeat_triTR_11to50*
99.7439
99.7184
99.7695
31.0247
389511389593
33.3333
hfeng-pmm1SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.4763
99.0588
99.8974
52.8829
389437389440
0.0000
hfeng-pmm3SNPtilowcmp_SimpleRepeat_triTR_11to50*
99.8206
99.6928
99.9487
29.2204
389412389321
50.0000
raldana-dualsentieonSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.3619
99.0333
99.6927
53.9179
3893383893120
0.0000
gduggal-bwafbSNPtilowcmp_SimpleRepeat_triTR_11to50*
99.3744
99.5648
99.1847
37.2000
3889173893327
21.8750
gduggal-bwavardSNP*map_l150_m0_e0homalt
98.1354
96.6740
99.6417
77.0204
395313638931410
71.4286
ckim-vqsrSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.6927
99.4381
99.9487
76.0337
389322389322
100.0000
hfeng-pmm1SNPtilowcmp_SimpleRepeat_triTR_11to50*
99.7949
99.6672
99.9230
28.5321
389313389231
33.3333
jlack-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.6416
99.4125
99.8717
75.1815
389223389255
100.0000
jmaeng-gatkSNPtilowcmp_SimpleRepeat_triTR_11to50*
99.7565
99.6672
99.8461
33.6736
389313389262
33.3333
jli-customINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
97.8720
95.8799
99.9486
22.7273
3863166389122
100.0000
ndellapenna-hhgaSNPtilowcmp_SimpleRepeat_triTR_11to50*
99.7564
99.5904
99.9230
28.4060
389016389130
0.0000
hfeng-pmm2SNPtilowcmp_SimpleRepeat_triTR_11to50*
99.7565
99.6416
99.8717
29.3435
389214389151
20.0000
raldana-dualsentieonSNPtilowcmp_SimpleRepeat_triTR_11to50*
99.7436
99.6160
99.8716
27.5888
389115389051
20.0000
gduggal-snapfbSNPtvmap_l150_m2_e0homalt
97.2621
95.2731
99.3359
82.3744
38901933889266
23.0769
astatham-gatkSNP*map_l250_m1_e0het
89.4949
81.7876
98.8059
91.8773
388986638894712
25.5319
cchapple-customSNP*map_l150_m0_e0homalt
97.4937
95.1333
99.9743
71.2925
3890199388811
100.0000
ckim-dragenSNPtvlowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9743
99.9743
99.9743
59.5233
38861388811
100.0000
jpowers-varprowlSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
98.4291
98.7026
98.1570
66.1366
3880513888731
1.3699
egarrison-hhgaSNPtilowcmp_SimpleRepeat_triTR_11to50*
99.6923
99.5392
99.8459
28.7987
388818388861
16.6667
eyeh-varpipeSNPtilowcmp_SimpleRepeat_quadTR_11to50homalt
98.9380
99.2225
98.6552
35.2022
39563138885317
32.0755
jpowers-varprowlSNPtvlowcmp_SimpleRepeat_homopolymer_6to10homalt
99.1961
99.9228
98.4799
61.8721
3884338876046
76.6667
astatham-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.6156
99.2848
99.9486
75.9210
388728388722
100.0000
hfeng-pmm2SNPtvlowcmp_SimpleRepeat_homopolymer_6to10homalt
100.0000
100.0000
100.0000
59.8035
38870388700
hfeng-pmm3SNPtvlowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9871
100.0000
99.9743
59.4747
38870388711
100.0000