PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1151-1200 / 86044 show all | |||||||||||||||
| raldana-dualsentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.3740 | 96.2418 | 98.5331 | 64.4408 | 62895 | 2456 | 62671 | 933 | 862 | 92.3901 | |
| raldana-dualsentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 97.3740 | 96.2418 | 98.5331 | 64.4408 | 62895 | 2456 | 62671 | 933 | 862 | 92.3901 | |
| bgallagher-sentieon | SNP | ti | map_siren | het | 99.4766 | 99.6377 | 99.3160 | 56.6817 | 62156 | 226 | 62147 | 428 | 50 | 11.6822 | |
| dgrover-gatk | SNP | ti | map_siren | het | 99.5897 | 99.6105 | 99.5689 | 58.1271 | 62139 | 243 | 62130 | 269 | 51 | 18.9591 | |
| hfeng-pmm3 | SNP | ti | map_siren | het | 99.6838 | 99.5672 | 99.8007 | 53.2950 | 62112 | 270 | 62103 | 124 | 11 | 8.8710 | |
| ckim-dragen | SNP | ti | map_siren | het | 98.6081 | 99.5319 | 97.7013 | 60.9808 | 62090 | 292 | 62097 | 1461 | 137 | 9.3771 | |
| hfeng-pmm2 | SNP | ti | map_siren | het | 99.5502 | 99.5223 | 99.5781 | 56.1068 | 62084 | 298 | 62075 | 263 | 19 | 7.2243 | |
| jli-custom | SNP | ti | map_siren | het | 99.5420 | 99.4806 | 99.6035 | 52.5864 | 62058 | 324 | 62054 | 247 | 50 | 20.2429 | |
| jlack-gatk | SNP | ti | map_siren | het | 97.5925 | 99.4357 | 95.8164 | 66.8895 | 62030 | 352 | 62021 | 2708 | 216 | 7.9764 | |
| eyeh-varpipe | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 75.9304 | 73.7693 | 78.2218 | 69.0738 | 48209 | 17142 | 62008 | 17264 | 16584 | 96.0612 | |
| eyeh-varpipe | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 75.9304 | 73.7693 | 78.2218 | 69.0738 | 48209 | 17142 | 62008 | 17264 | 16584 | 96.0612 | |
| rpoplin-dv42 | SNP | ti | map_siren | het | 99.5664 | 99.3973 | 99.7362 | 53.8516 | 62006 | 376 | 61997 | 164 | 94 | 57.3171 | |
| raldana-dualsentieon | SNP | ti | map_siren | het | 99.3661 | 99.3941 | 99.3382 | 55.1273 | 62004 | 378 | 61995 | 413 | 8 | 1.9371 | |
| ghariani-varprowl | SNP | ti | map_siren | het | 98.6913 | 99.3636 | 98.0280 | 62.9270 | 61985 | 397 | 61987 | 1247 | 191 | 15.3168 | |
| gduggal-bwafb | SNP | ti | map_siren | het | 99.0568 | 99.3219 | 98.7930 | 59.4400 | 61959 | 423 | 61963 | 757 | 131 | 17.3052 | |
| hfeng-pmm1 | SNP | ti | map_siren | het | 99.5806 | 99.3331 | 99.8292 | 52.2251 | 61966 | 416 | 61957 | 106 | 24 | 22.6415 | |
| egarrison-hhga | SNP | ti | map_siren | het | 99.5580 | 99.2867 | 99.8308 | 53.2460 | 61937 | 445 | 61938 | 105 | 38 | 36.1905 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 83.1973 | 74.7833 | 93.7446 | 68.3849 | 11649 | 3928 | 61758 | 4121 | 4009 | 97.2822 | |
| ltrigg-rtg1 | SNP | ti | map_siren | het | 99.2961 | 98.9388 | 99.6561 | 47.8678 | 61719 | 662 | 61718 | 213 | 10 | 4.6948 | |
| ndellapenna-hhga | SNP | ti | map_siren | het | 99.3687 | 98.9067 | 99.8350 | 52.2716 | 61700 | 682 | 61701 | 102 | 39 | 38.2353 | |
| gduggal-snapplat | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 67.1528 | 57.9879 | 79.7584 | 80.2389 | 54769 | 39680 | 61674 | 15652 | 4576 | 29.2359 | |
| astatham-gatk | SNP | * | map_l100_m1_e0 | * | 91.9136 | 85.1664 | 99.8219 | 69.0267 | 61663 | 10740 | 61652 | 110 | 52 | 47.2727 | |
| ltrigg-rtg2 | SNP | ti | map_siren | het | 99.2569 | 98.8202 | 99.6976 | 45.2238 | 61645 | 736 | 61646 | 187 | 11 | 5.8824 | |
| gduggal-snapfb | SNP | ti | map_siren | het | 98.2591 | 98.8009 | 97.7232 | 58.6413 | 61634 | 748 | 61636 | 1436 | 494 | 34.4011 | |
| ciseli-custom | INDEL | * | HG002complexvar | * | 81.0665 | 80.3871 | 81.7575 | 57.5412 | 61845 | 15089 | 61574 | 13739 | 8055 | 58.6287 | |
| cchapple-custom | SNP | ti | map_siren | het | 98.0329 | 98.5813 | 97.4906 | 61.4640 | 61497 | 885 | 61538 | 1584 | 362 | 22.8535 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 94.5807 | 94.0681 | 95.0990 | 73.7052 | 60609 | 3822 | 61530 | 3171 | 1742 | 54.9354 | |
| jmaeng-gatk | SNP | * | map_l100_m2_e1 | * | 89.5016 | 82.2404 | 98.1693 | 79.7702 | 61464 | 13273 | 61453 | 1146 | 79 | 6.8935 | |
| ckim-gatk | SNP | * | map_l100_m2_e1 | * | 89.5170 | 82.2096 | 98.2503 | 79.5686 | 61441 | 13296 | 61430 | 1094 | 86 | 7.8611 | |
| ciseli-custom | SNP | * | map_l100_m2_e1 | * | 85.2411 | 82.0102 | 88.7370 | 71.8319 | 61292 | 13445 | 61099 | 7755 | 2048 | 26.4088 | |
| jpowers-varprowl | SNP | ti | map_siren | het | 98.2302 | 97.8231 | 98.6406 | 61.2920 | 61024 | 1358 | 61026 | 841 | 198 | 23.5434 | |
| ckim-isaac | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 96.4197 | 94.8503 | 98.0420 | 61.5230 | 61113 | 3318 | 60987 | 1218 | 972 | 79.8030 | |
| jmaeng-gatk | SNP | * | map_l100_m2_e0 | * | 89.4136 | 82.0994 | 98.1585 | 79.7900 | 60724 | 13240 | 60713 | 1139 | 79 | 6.9359 | |
| ckim-gatk | SNP | * | map_l100_m2_e0 | * | 89.4294 | 82.0710 | 98.2373 | 79.5869 | 60703 | 13261 | 60692 | 1089 | 86 | 7.8972 | |
| eyeh-varpipe | SNP | ti | map_siren | het | 99.1597 | 99.7515 | 98.5748 | 60.2517 | 62227 | 155 | 60657 | 877 | 34 | 3.8769 | |
| egarrison-hhga | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 93.9659 | 93.6956 | 94.2379 | 71.6964 | 60369 | 4062 | 60447 | 3696 | 3375 | 91.3149 | |
| ciseli-custom | SNP | * | map_l100_m2_e0 | * | 85.1771 | 81.9318 | 88.6900 | 71.8362 | 60600 | 13364 | 60413 | 7704 | 2033 | 26.3889 | |
| cchapple-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 97.7409 | 96.6568 | 98.8496 | 59.7558 | 29461 | 1019 | 60407 | 703 | 560 | 79.6586 | |
| cchapple-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 97.7409 | 96.6568 | 98.8496 | 59.7558 | 29461 | 1019 | 60407 | 703 | 560 | 79.6586 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 93.9899 | 93.5543 | 94.4295 | 71.2140 | 60278 | 4153 | 60365 | 3561 | 3233 | 90.7891 | |
| gduggal-bwafb | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 96.1730 | 94.0088 | 98.4392 | 67.8764 | 45379 | 2892 | 60357 | 957 | 752 | 78.5789 | |
| bgallagher-sentieon | INDEL | I1_5 | * | homalt | 99.6433 | 99.8593 | 99.4283 | 55.0054 | 60343 | 85 | 60348 | 347 | 343 | 98.8473 | |
| dgrover-gatk | INDEL | I1_5 | * | homalt | 99.7224 | 99.8577 | 99.5874 | 55.4630 | 60342 | 86 | 60347 | 250 | 246 | 98.4000 | |
| astatham-gatk | INDEL | I1_5 | * | homalt | 99.7125 | 99.8544 | 99.5710 | 55.1217 | 60340 | 88 | 60345 | 260 | 257 | 98.8462 | |
| jli-custom | INDEL | I1_5 | * | homalt | 99.8065 | 99.8527 | 99.7603 | 53.8126 | 60339 | 89 | 60343 | 145 | 140 | 96.5517 | |
| jmaeng-gatk | INDEL | I1_5 | * | homalt | 99.7149 | 99.8444 | 99.5857 | 55.4032 | 60334 | 94 | 60340 | 251 | 245 | 97.6096 | |
| ckim-gatk | INDEL | I1_5 | * | homalt | 99.7125 | 99.8428 | 99.5825 | 55.2232 | 60333 | 95 | 60339 | 253 | 249 | 98.4190 | |
| raldana-dualsentieon | INDEL | I1_5 | * | homalt | 99.6902 | 99.8428 | 99.5381 | 54.0742 | 60333 | 95 | 60337 | 280 | 279 | 99.6429 | |
| ckim-vqsr | INDEL | I1_5 | * | homalt | 99.7099 | 99.8312 | 99.5890 | 55.2277 | 60326 | 102 | 60332 | 249 | 247 | 99.1968 | |
| hfeng-pmm2 | INDEL | I1_5 | * | homalt | 99.7668 | 99.8262 | 99.7075 | 52.8322 | 60323 | 105 | 60327 | 177 | 174 | 98.3051 | |