PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TP Query FPFP gt% FP ma
11551-11600 / 86044 show all
astatham-gatkSNPtimap_l150_m0_e0het
89.8677
82.0483
99.3346
85.7819
41829154180289
32.1429
hfeng-pmm1SNPtvHG002compoundhethet
94.3861
89.4072
99.9521
52.4903
4178495417622
100.0000
asubramanian-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
97.8499
98.2717
97.4317
68.9817
3696654173110107
97.2727
asubramanian-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
97.8499
98.2717
97.4317
68.9817
3696654173110107
97.2727
gduggal-bwavardINDELI6_15*homalt
80.3317
67.3345
99.5468
32.9387
4201203841731915
78.9474
mlin-fermikitINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
81.9762
69.7710
99.3570
62.1268
4143179541722727
100.0000
raldana-dualsentieonSNPtvHG002compoundhethet
94.2957
89.3216
99.8564
53.2191
4174499417263
50.0000
gduggal-bwavardINDELD16_PLUS**
63.4968
61.3502
65.7990
69.3353
41622622417121681906
87.9151
hfeng-pmm2SNPtvHG002compoundhethet
94.2146
89.2146
99.8084
51.8565
4169504416782
25.0000
eyeh-varpipeSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
95.9908
99.7206
92.5300
66.9362
42831241623369
2.6786
astatham-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
99.0127
98.2067
99.8321
79.0112
416276416274
57.1429
anovak-vgSNPtimap_l250_m2_e1*
75.8245
82.3089
70.2872
91.6096
417889841611759398
22.6265
gduggal-bwaplatSNPtvmap_l150_m2_e0het
72.7336
57.3635
99.3551
93.0443
416030924160275
18.5185
ckim-isaacSNPtimap_l100_m0_e0homalt
69.6665
53.4731
99.9279
52.0793
41573617415733
100.0000
eyeh-varpipeINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50homalt
92.1748
98.3088
86.7613
48.1654
3604624155634622
98.1073
ltrigg-rtg2INDEL*HG002complexvarhetalt
95.5730
93.2685
97.9943
75.0000
345024941538584
98.8235
gduggal-bwavardSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
96.2853
97.2759
95.3147
68.9687
4178117415020419
9.3137
ghariani-varprowlSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
85.6376
97.1213
76.5824
85.4250
41161224150126911
0.8668
jmaeng-gatkSNPtimap_l150_m1_e0homalt
72.2900
56.6125
99.9759
78.8887
41483179414811
100.0000
egarrison-hhgaSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
98.2233
97.8292
98.6207
80.5008
41469241475816
27.5862
ltrigg-rtg1SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
98.6268
98.9870
98.2693
80.7168
4104424145731
1.3699
ckim-dragenSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
99.3735
99.2041
99.5436
81.7204
4113334144198
42.1053
mlin-fermikitSNP*map_l125_m0_e0het
49.1614
32.7622
98.4323
62.8190
414985154144663
4.5455
jpowers-varprowlSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
95.8792
96.9561
94.8260
86.0126
4109129414222611
4.8673
ltrigg-rtg2SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
98.5296
98.8181
98.2427
79.9696
4097494137742
2.7027
bgallagher-sentieonSNPtvmap_l150_m0_e0*
98.4884
99.1375
97.8477
81.2755
41383641379110
10.9890
asubramanian-gatkINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
98.4134
99.1518
97.6860
71.1060
35073041379896
97.9592
eyeh-varpipeSNPtvmap_l150_m0_e0*
95.6512
99.5927
92.0098
83.3079
41571741343598
2.2284
hfeng-pmm3SNPtvmap_l150_m0_e0*
99.0651
99.0177
99.1125
80.0536
4133414132373
8.1081
hfeng-pmm2SNPtvmap_l150_m0_e0*
98.6509
98.9938
98.3103
81.9664
4132424131716
8.4507
cchapple-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
98.9299
98.8905
98.9693
81.5684
41004641294311
25.5814
ckim-gatkSNPtimap_l150_m1_e0homalt
72.0545
56.3396
99.9274
79.8232
41283199412832
66.6667
gduggal-snapfbINDELI1_5*hetalt
80.2098
77.5793
83.0249
77.6167
868525104128844445
52.7251
rpoplin-dv42SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
99.6260
99.6141
99.6379
82.9126
4130164128158
53.3333
ltrigg-rtg1SNPtvmap_l150_m2_e1homalt
99.8426
99.7339
99.9516
72.6103
412311412722
100.0000
jpowers-varprowlINDEL*HG002compoundhet*
14.0649
13.8284
14.3095
60.1145
41432581741262470824326
98.4539
hfeng-pmm1SNPtvmap_l150_m0_e0*
99.0281
98.8740
99.1827
80.1043
4127474126346
17.6471
jli-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
99.3377
99.4935
99.1825
82.1709
4125214125346
17.6471
ndellapenna-hhgaSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
97.9456
97.3101
98.5895
80.0705
412411441245915
25.4237
gduggal-snapvardSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
92.8856
96.9499
89.1483
74.7503
4164131412450211
2.1912
dgrover-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
99.4814
99.4694
99.4934
82.7155
4124224124217
33.3333
hfeng-pmm1SNPtvmap_l150_m2_e1homalt
99.7219
99.7339
99.7098
73.9872
4123114123124
33.3333
hfeng-pmm2SNPtvmap_l150_m2_e1homalt
99.7219
99.7339
99.7098
74.0785
4123114123124
33.3333
ltrigg-rtg2SNPtvmap_l150_m2_e1homalt
99.7941
99.6372
99.9515
70.3259
411915412321
50.0000
qzeng-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
97.5943
98.9387
96.2859
86.8966
410244412215929
18.2390
bgallagher-sentieonSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
99.4691
99.4211
99.5171
82.2582
4122244122207
35.0000
dgrover-gatkSNPtvmap_l150_m0_e0*
98.5887
98.7542
98.4237
82.7837
41225241216610
15.1515
ckim-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
99.4448
99.3729
99.5169
82.8933
4120264120208
40.0000
hfeng-pmm3SNPtvmap_l150_m2_e1homalt
99.6855
99.6613
99.7096
73.9141
4120144120124
33.3333
egarrison-hhgaSNPtvmap_l150_m2_e1homalt
99.7698
99.6130
99.9272
73.5901
411816411833
100.0000