PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
11351-11400 / 86044 show all | |||||||||||||||
| dgrover-gatk | SNP | tv | func_cds | * | 99.9085 | 99.9771 | 99.8400 | 29.8268 | 4370 | 1 | 4369 | 7 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | tv | func_cds | * | 99.4084 | 99.9542 | 98.8685 | 34.6495 | 4369 | 2 | 4369 | 50 | 0 | 0.0000 | |
| raldana-dualsentieon | SNP | tv | func_cds | * | 99.8743 | 99.9771 | 99.7716 | 27.8940 | 4370 | 1 | 4369 | 10 | 0 | 0.0000 | |
| cchapple-custom | SNP | tv | func_cds | * | 99.5556 | 99.9085 | 99.2053 | 32.6708 | 4367 | 4 | 4369 | 35 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 98.9169 | 99.3027 | 98.5341 | 69.1612 | 4415 | 31 | 4369 | 65 | 62 | 95.3846 | |
| jlack-gatk | SNP | tv | func_cds | * | 98.8573 | 99.9771 | 97.7624 | 38.5704 | 4370 | 1 | 4369 | 100 | 0 | 0.0000 | |
| hfeng-pmm3 | SNP | tv | func_cds | * | 99.9428 | 99.9771 | 99.9085 | 28.1938 | 4370 | 1 | 4369 | 4 | 0 | 0.0000 | |
| hfeng-pmm1 | SNP | tv | func_cds | * | 99.9314 | 99.9542 | 99.9085 | 27.9499 | 4369 | 2 | 4368 | 4 | 0 | 0.0000 | |
| rpoplin-dv42 | SNP | tv | func_cds | * | 99.9199 | 99.9314 | 99.9085 | 29.6249 | 4368 | 3 | 4367 | 4 | 1 | 25.0000 | |
| ltrigg-rtg1 | SNP | tv | func_cds | * | 99.4080 | 99.8856 | 98.9350 | 27.2263 | 4366 | 5 | 4366 | 47 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | tv | func_cds | * | 99.5213 | 99.8856 | 99.1597 | 26.7631 | 4366 | 5 | 4366 | 37 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 97.6437 | 99.1903 | 96.1445 | 69.5777 | 4410 | 36 | 4364 | 175 | 167 | 95.4286 | |
| dgrover-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 97.6979 | 99.1678 | 96.2710 | 69.5061 | 4409 | 37 | 4363 | 169 | 161 | 95.2663 | |
| hfeng-pmm3 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 96.2723 | 92.8126 | 100.0000 | 27.2105 | 4313 | 334 | 4363 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | * | map_siren | het | 98.0316 | 97.4490 | 98.6212 | 76.8583 | 4393 | 115 | 4363 | 61 | 2 | 3.2787 | |
| jmaeng-gatk | SNP | * | map_l250_m2_e0 | * | 70.5188 | 55.3329 | 97.1931 | 96.2932 | 4363 | 3522 | 4363 | 126 | 10 | 7.9365 | |
| astatham-gatk | SNP | ti | map_l250_m2_e0 | * | 92.8085 | 87.1006 | 99.3169 | 90.7841 | 4362 | 646 | 4362 | 30 | 12 | 40.0000 | |
| astatham-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 97.5878 | 99.1228 | 96.0996 | 69.2547 | 4407 | 39 | 4361 | 177 | 169 | 95.4802 | |
| bgallagher-sentieon | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 97.4461 | 99.1228 | 95.8251 | 69.1792 | 4407 | 39 | 4361 | 190 | 182 | 95.7895 | |
| bgallagher-sentieon | SNP | tv | map_l125_m0_e0 | het | 98.2208 | 99.1138 | 97.3437 | 79.3814 | 4362 | 39 | 4361 | 119 | 15 | 12.6050 | |
| jmaeng-gatk | SNP | tv | func_cds | * | 99.2038 | 99.7941 | 98.6205 | 39.0741 | 4362 | 9 | 4361 | 61 | 0 | 0.0000 | |
| ckim-gatk | SNP | tv | func_cds | * | 99.5776 | 99.7941 | 99.3620 | 38.5208 | 4362 | 9 | 4361 | 28 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 94.8267 | 90.2557 | 99.8855 | 32.3046 | 4307 | 465 | 4360 | 5 | 4 | 80.0000 | |
| ckim-vqsr | INDEL | * | map_siren | het | 97.3739 | 96.6060 | 98.1540 | 87.1388 | 4355 | 153 | 4360 | 82 | 11 | 13.4146 | |
| astatham-gatk | SNP | tv | func_cds | * | 99.8283 | 99.7483 | 99.9083 | 29.1951 | 4360 | 11 | 4359 | 4 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 97.5970 | 99.0328 | 96.2023 | 69.6244 | 4403 | 43 | 4357 | 172 | 164 | 95.3488 | |
| ckim-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 96.1468 | 92.6189 | 99.9541 | 23.6736 | 4304 | 343 | 4357 | 2 | 2 | 100.0000 | |
| ckim-dragen | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 96.2607 | 92.7910 | 100.0000 | 26.5013 | 4312 | 335 | 4357 | 0 | 0 | ||
| ghariani-varprowl | SNP | tv | func_cds | * | 99.2142 | 99.6568 | 98.7755 | 38.2266 | 4356 | 15 | 4356 | 54 | 5 | 9.2593 | |
| ckim-vqsr | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 96.1236 | 92.5759 | 99.9541 | 23.6819 | 4302 | 345 | 4355 | 2 | 2 | 100.0000 | |
| ckim-vqsr | SNP | tv | func_cds | * | 99.7367 | 99.6568 | 99.8166 | 38.6616 | 4356 | 15 | 4355 | 8 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | * | map_l250_m1_e0 | het | 95.5463 | 91.5878 | 99.8624 | 74.1983 | 4355 | 400 | 4355 | 6 | 1 | 16.6667 | |
| dgrover-gatk | SNP | tv | map_l125_m0_e0 | het | 98.4509 | 98.9321 | 97.9743 | 81.0960 | 4354 | 47 | 4353 | 90 | 15 | 16.6667 | |
| hfeng-pmm3 | SNP | tv | map_l125_m0_e0 | het | 99.0220 | 98.9321 | 99.1120 | 76.4302 | 4354 | 47 | 4353 | 39 | 3 | 7.6923 | |
| ltrigg-rtg1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 98.3672 | 99.4179 | 97.3384 | 59.4908 | 4270 | 25 | 4352 | 119 | 1 | 0.8403 | |
| ghariani-varprowl | SNP | tv | map_l125_m0_e0 | het | 95.4481 | 98.8639 | 92.2604 | 83.4014 | 4351 | 50 | 4351 | 365 | 64 | 17.5342 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 94.6815 | 98.3806 | 91.2505 | 66.8429 | 4374 | 72 | 4349 | 417 | 409 | 98.0815 | |
| asubramanian-gatk | SNP | tv | func_cds | * | 99.5422 | 99.4967 | 99.5877 | 36.6971 | 4349 | 22 | 4348 | 18 | 0 | 0.0000 | |
| anovak-vg | SNP | ti | map_l150_m0_e0 | het | 74.8246 | 85.7367 | 66.3765 | 86.9328 | 4370 | 727 | 4347 | 2202 | 593 | 26.9301 | |
| hfeng-pmm2 | SNP | tv | map_l125_m0_e0 | het | 98.4153 | 98.7957 | 98.0379 | 79.2988 | 4348 | 53 | 4347 | 87 | 9 | 10.3448 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 97.3197 | 98.8079 | 95.8756 | 69.0152 | 4393 | 53 | 4347 | 187 | 182 | 97.3262 | |
| anovak-vg | SNP | tv | HG002compoundhet | het | 77.7767 | 79.7346 | 75.9127 | 53.8008 | 3726 | 947 | 4346 | 1379 | 1030 | 74.6918 | |
| qzeng-custom | SNP | tv | func_cds | * | 99.6678 | 99.6797 | 99.6560 | 35.7311 | 4357 | 14 | 4345 | 15 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.7291 | 97.9738 | 99.4961 | 65.8453 | 3820 | 79 | 4344 | 22 | 13 | 59.0909 | |
| eyeh-varpipe | SNP | tv | func_cds | * | 94.7737 | 99.9771 | 90.0850 | 32.1750 | 4370 | 1 | 4343 | 478 | 0 | 0.0000 | |
| ckim-isaac | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | * | 92.3491 | 87.7265 | 97.4860 | 57.2867 | 4260 | 596 | 4343 | 112 | 72 | 64.2857 | |
| gduggal-snapvard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 63.4268 | 61.9457 | 64.9805 | 71.6420 | 3171 | 1948 | 4342 | 2340 | 1455 | 62.1795 | |
| ltrigg-rtg2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 98.0504 | 99.1851 | 96.9413 | 58.5086 | 4260 | 35 | 4342 | 137 | 1 | 0.7299 | |
| ltrigg-rtg2 | INDEL | I6_15 | HG002complexvar | * | 98.0543 | 96.8698 | 99.2681 | 50.7658 | 4642 | 150 | 4340 | 32 | 18 | 56.2500 | |
| ckim-isaac | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 80.2615 | 74.0424 | 87.6212 | 52.2423 | 4504 | 1579 | 4339 | 613 | 548 | 89.3964 | |