PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TP Query FPFP gt% FP ma
11051-11100 / 86044 show all
ghariani-varprowlSNP*map_l250_m1_e0het
94.1868
97.7918
90.8381
91.9418
4650105465046980
17.0576
egarrison-hhgaSNPtvlowcmp_SimpleRepeat_quadTR_11to50het
99.4116
99.0616
99.7639
37.2813
4645444649115
45.4545
gduggal-bwaplatSNP*map_l150_m1_e0homalt
58.4217
41.2756
99.9355
84.5500
46536620464933
100.0000
jli-customSNPtvHG002compoundhethet
99.4759
99.5292
99.4226
55.0428
46512246492710
37.0370
jlack-gatkSNPtvHG002compoundhethet
98.9462
99.4650
98.4329
56.5753
46482546487414
18.9189
jlack-gatkINDELI6_15HG002complexvar*
97.6141
96.8698
98.3700
57.6968
464215046477775
97.4026
jmaeng-gatkINDELI6_15HG002complexvar*
97.9019
96.8698
98.9563
57.2482
464215046464949
100.0000
jli-customINDELD6_15lowcmp_SimpleRepeat_diTR_11to50hetalt
98.2100
97.1081
99.3372
24.1239
463413846463130
96.7742
gduggal-snapfbINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
90.9278
97.6646
85.0604
50.5657
46421114646816787
96.4461
jli-customINDELI6_15HG002complexvar*
98.1083
96.8489
99.4008
55.2909
464115146452823
82.1429
raldana-dualsentieonSNP*lowcmp_AllRepeats_51to200bp_gt95identity_merged*
98.5255
97.4811
99.5925
63.6357
46441204644192
10.5263
rpoplin-dv42SNPtvHG002compoundhethet
99.5284
99.3794
99.6779
54.5836
46442946421510
66.6667
hfeng-pmm1SNP*lowcmp_AllRepeats_51to200bp_gt95identity_merged*
98.5556
97.3971
99.7420
65.4794
46401244640121
8.3333
ltrigg-rtg2INDELD6_15lowcmp_SimpleRepeat_diTR_11to50hetalt
98.1891
97.1291
99.2726
27.7365
463513746403434
100.0000
ndellapenna-hhgaSNPtvlowcmp_SimpleRepeat_quadTR_11to50het
99.2827
98.8697
99.6991
37.4429
4636534639144
28.5714
ghariani-varprowlSNPtvlowcmp_SimpleRepeat_quadTR_11to50het
95.3623
98.6138
92.3184
52.1702
46246546393865
1.2953
gduggal-bwavardINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
37.1023
33.8847
40.9951
49.8226
46719114463966776648
99.5657
hfeng-pmm2SNP*lowcmp_AllRepeats_51to200bp_gt95identity_merged*
98.4084
97.3342
99.5065
66.1830
46371274638231
4.3478
asubramanian-gatkSNPtvlowcmp_SimpleRepeat_quadTR_11to50het
97.8791
98.9123
96.8672
42.4242
46385146381502
1.3333
astatham-gatkSNPtvlowcmp_SimpleRepeat_quadTR_11to50het
99.3998
98.8910
99.9138
41.4542
463752463441
25.0000
raldana-dualsentieonSNP*map_l250_m1_e0het
97.3427
97.4553
97.2304
88.8130
463412146341323
2.2727
asubramanian-gatkINDELI6_15HG002complexvar*
97.6558
96.4524
98.8896
58.1164
462217046315244
84.6154
ciseli-customSNP*map_l250_m1_e0*
68.5054
64.2204
73.4031
91.7933
4638258446311678322
19.1895
ckim-dragenSNP*lowcmp_SimpleRepeat_triTR_11to50het
99.7626
99.9133
99.6124
36.8335
461244626187
38.8889
ckim-isaacINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
82.0986
72.9041
93.9468
53.8786
460917134625298190
63.7584
ckim-isaacINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331*
82.0986
72.9041
93.9468
53.8786
460917134625298190
63.7584
ckim-gatkSNPtvHG002compoundhethet
99.2595
98.9728
99.5478
55.8932
46254846232113
61.9048
ltrigg-rtg2INDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
98.7188
97.6759
99.7842
42.6822
453910846231010
100.0000
asubramanian-gatkSNPtimap_l100_m0_e0het
49.6427
33.0401
99.7840
91.6649
462093634620105
50.0000
raldana-dualsentieonSNPtvlowcmp_SimpleRepeat_quadTR_11to50het
98.5286
98.5711
98.4861
38.0204
4622674619710
0.0000
hfeng-pmm1SNPtvlowcmp_SimpleRepeat_quadTR_11to50het
99.1845
98.5711
99.8055
37.0083
462267461990
0.0000
hfeng-pmm3SNPtvlowcmp_SimpleRepeat_quadTR_11to50het
99.2056
98.5498
99.8702
37.4713
462168461860
0.0000
asubramanian-gatkSNP*map_l125_m2_e0homalt
41.9933
26.5784
99.9784
88.1315
461812757461810
0.0000
asubramanian-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
94.8288
92.9433
96.7925
52.5751
36222754617153140
91.5033
ltrigg-rtg2INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331*
96.0206
93.2787
98.9286
61.7804
466333646175035
70.0000
ltrigg-rtg2INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
96.0206
93.2787
98.9286
61.7804
466333646175035
70.0000
ltrigg-rtg2SNP*lowcmp_SimpleRepeat_triTR_11to50het
99.6003
99.6750
99.5257
31.5929
4601154616222
9.0909
ltrigg-rtg1SNP*lowcmp_SimpleRepeat_triTR_11to50het
99.6541
99.6750
99.6331
31.4341
4601154616172
11.7647
ciseli-customSNP*lowcmp_AllRepeats_51to200bp_gt95identity_merged*
76.2286
96.1797
63.1327
74.0117
458218246152695108
4.0074
egarrison-hhgaSNP*map_l250_m1_e0het
98.2228
97.0557
99.4184
88.3044
461514046152710
37.0370
mlin-fermikitSNPtvmap_l150_m1_e0*
56.0020
42.3295
82.7209
62.1223
461962934615964841
87.2407
ltrigg-rtg2SNPtvHG002compoundhethet
99.1949
98.9300
99.4612
50.0484
4623504615255
20.0000
jpowers-varprowlSNPtvlowcmp_SimpleRepeat_quadTR_11to50het
97.0939
98.2086
96.0042
48.3222
46058446131928
4.1667
gduggal-bwafbSNP*lowcmp_SimpleRepeat_triTR_11to50het
99.2360
99.6967
98.7794
42.1600
4602144613579
15.7895
gduggal-snapfbSNP*lowcmp_SimpleRepeat_triTR_11to50het
93.6725
99.5667
88.4372
45.0706
459620461260312
1.9901
jmaeng-gatkSNPtvHG002compoundhethet
99.2149
98.7160
99.7189
56.1374
46136046111311
84.6154
hfeng-pmm1INDELD6_15lowcmp_SimpleRepeat_diTR_11to50hetalt
98.1326
96.3537
99.9783
25.7249
4598174461010
0.0000
mlin-fermikitINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
80.4581
67.4235
99.7403
24.8984
4603222446091212
100.0000
bgallagher-sentieonSNP*lowcmp_SimpleRepeat_triTR_11to50het
99.6756
99.9350
99.4176
34.7502
461334609272
7.4074
ckim-gatkSNP*lowcmp_SimpleRepeat_triTR_11to50het
99.8159
99.9133
99.7187
39.4602
461244608133
23.0769