PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TP Query FPFP gt% FP ma
10801-10850 / 86044 show all
egarrison-hhgaINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
95.4728
95.2120
95.7351
40.3377
4872245487121788
40.5530
egarrison-hhgaINDELD6_15HG002compoundhet*
61.1341
52.4527
73.2591
39.3063
47374294487117781713
96.3442
ndellapenna-hhgaINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
95.0800
95.1730
94.9873
39.7320
48702474870257123
47.8599
cchapple-customSNPtimap_l250_m2_e1*
96.4747
96.0008
96.9534
90.2115
4873203486915342
27.4510
jmaeng-gatkSNPtimap_l100_m0_e0homalt
77.0009
62.6190
99.9589
69.2803
48682906486822
100.0000
cchapple-customSNPtimap_l150_m0_e0het
95.1985
95.5072
94.8918
84.4938
4868229486726276
29.0076
gduggal-bwaplatINDELD16_PLUS**
82.9287
71.7129
98.3034
72.8727
4865191948678465
77.3810
ckim-vqsrSNPtvmap_l100_m0_e0het
79.8556
67.3775
98.0060
89.3473
486623564866991
1.0101
gduggal-bwavardINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
59.7005
42.6942
99.2246
54.0503
4903658148633833
86.8421
qzeng-customSNPtvlowcmp_SimpleRepeat_diTR_11to50*
98.5273
99.1969
97.8668
72.2743
481739486310620
18.8679
anovak-vgINDELD1_5HG002compoundhet*
38.6407
34.4667
43.9649
65.5035
42178018485961934434
71.5970
ndellapenna-hhgaSNPtimap_l250_m2_e0*
98.3102
97.0048
99.6513
87.8762
48581504858179
52.9412
gduggal-bwavardSNPtimap_l250_m2_e0*
91.4486
97.4840
86.1170
92.1941
4882126485778327
3.4483
anovak-vgSNPtvmap_l125_m2_e0homalt
89.0712
80.8709
99.1223
69.1421
4866115148564332
74.4186
dgrover-gatkINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331*
97.2689
97.4195
97.1188
75.1529
48701294854144103
71.5278
dgrover-gatkINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
97.2689
97.4195
97.1188
75.1529
48701294854144103
71.5278
ltrigg-rtg2SNP*map_l250_m2_e1het
95.8720
92.2112
99.8355
76.2366
4854410485481
12.5000
gduggal-snapfbSNPtilowcmp_SimpleRepeat_diTR_11to50*
71.1247
96.9196
56.1741
75.2924
468814948543787159
4.1986
astatham-gatkINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331*
97.2879
97.3995
97.1766
75.1789
48691304853141104
73.7589
astatham-gatkINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
97.2879
97.3995
97.1766
75.1789
48691304853141104
73.7589
ltrigg-rtg1SNPtimap_l150_m0_e0het
97.4302
95.2129
99.7533
66.6849
48532444853123
25.0000
gduggal-snapvardSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
94.7012
90.7431
99.0204
73.2912
492150248524828
58.3333
gduggal-snapvardSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
94.7012
90.7431
99.0204
73.2912
492150248524828
58.3333
ckim-gatkINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331*
97.1889
97.3395
97.0388
75.6563
48661334850148106
71.6216
ckim-gatkINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
97.1889
97.3395
97.0388
75.6563
48661334850148106
71.6216
ckim-dragenSNPtvlowcmp_SimpleRepeat_diTR_11to50*
99.7426
99.6705
99.8147
66.5588
484016484998
88.8889
anovak-vgINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
49.1489
40.2731
63.0429
36.1826
23893543484828422348
82.6179
ckim-vqsrINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331*
97.2658
97.2995
97.2323
75.7006
48641354848138105
76.0870
ckim-vqsrINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
97.2658
97.2995
97.2323
75.7006
48641354848138105
76.0870
ciseli-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
66.1516
85.8124
53.8205
46.0515
4875806484641583808
91.5825
qzeng-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
95.4416
94.4303
96.4748
33.6724
48322854844177175
98.8701
ckim-dragenSNPtilowcmp_SimpleRepeat_diTR_11to50*
99.7111
99.6899
99.7323
69.3066
48221548431310
76.9231
ckim-gatkSNPtimap_l100_m0_e0homalt
76.7317
62.2717
99.9381
70.4634
48412933484132
66.6667
ckim-gatkSNPtvlowcmp_SimpleRepeat_diTR_11to50*
99.7116
99.6705
99.7527
66.7352
48401648401210
83.3333
dgrover-gatkSNPtvlowcmp_SimpleRepeat_diTR_11to50*
99.7116
99.6705
99.7527
66.8941
4840164840129
75.0000
rpoplin-dv42SNPtvlowcmp_SimpleRepeat_diTR_11to50*
99.6705
99.6705
99.6705
66.2895
48401648401613
81.2500
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_diTR_11to50*
99.7013
99.6705
99.7321
66.3966
48401648401310
76.9231
jpowers-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
36.2353
32.7562
40.5412
52.4633
48439942483970977056
99.4223
jmaeng-gatkSNPtvlowcmp_SimpleRepeat_diTR_11to50*
99.6909
99.6293
99.7526
66.9619
4838184838129
75.0000
jli-customSNPtvlowcmp_SimpleRepeat_diTR_11to50*
99.6909
99.6293
99.7526
66.4708
4838184838128
66.6667
ckim-vqsrSNPtvlowcmp_SimpleRepeat_diTR_11to50*
99.6806
99.6087
99.7525
66.7490
48371948371210
83.3333
bgallagher-sentieonINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331*
96.9180
97.0394
96.7968
74.8717
48511484835160117
73.1250
bgallagher-sentieonINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
96.9180
97.0394
96.7968
74.8717
48511484835160117
73.1250
gduggal-snapfbSNPtimap_l150_m0_e0het
94.2863
94.8597
93.7197
77.7514
48352624835324174
53.7037
jlack-gatkSNPtvlowcmp_SimpleRepeat_diTR_11to50*
99.4853
99.5058
99.4648
66.6987
48322448322614
53.8462
asubramanian-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
95.8836
92.6404
99.3621
26.9063
430534248293130
96.7742
bgallagher-sentieonSNPtilowcmp_SimpleRepeat_diTR_11to50*
99.8449
99.8139
99.8759
69.1925
48289482865
83.3333
gduggal-bwaplatSNP*map_l150_m0_e0*
57.1530
40.1263
99.2803
94.5754
4828720448283515
42.8571
eyeh-varpipeINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
76.3850
99.7475
61.8895
40.6948
474112482829732967
99.7982
dgrover-gatkSNPtilowcmp_SimpleRepeat_diTR_11to50*
99.8552
99.7933
99.9172
69.3872
482710482743
75.0000