PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1001-1050 / 86044 show all | |||||||||||||||
| hfeng-pmm3 | SNP | * | map_l100_m2_e1 | * | 99.6666 | 99.5946 | 99.7387 | 65.1913 | 74434 | 303 | 74423 | 195 | 31 | 15.8974 | |
| bgallagher-sentieon | SNP | * | map_l100_m2_e1 | * | 99.4314 | 99.5705 | 99.2927 | 67.0857 | 74416 | 321 | 74405 | 530 | 81 | 15.2830 | |
| hfeng-pmm2 | SNP | * | map_l100_m2_e1 | * | 99.5245 | 99.5678 | 99.4812 | 67.6245 | 74414 | 323 | 74403 | 388 | 47 | 12.1134 | |
| ndellapenna-hhga | INDEL | * | HG002complexvar | * | 97.2866 | 96.6882 | 97.8924 | 67.2163 | 74390 | 2548 | 74363 | 1601 | 1150 | 71.8301 | |
| dgrover-gatk | SNP | * | map_l100_m2_e1 | * | 99.4995 | 99.4835 | 99.5154 | 68.3658 | 74351 | 386 | 74340 | 362 | 79 | 21.8232 | |
| gduggal-bwafb | INDEL | * | HG002complexvar | * | 96.4189 | 94.4813 | 98.4377 | 54.9407 | 72692 | 4246 | 74289 | 1179 | 1015 | 86.0899 | |
| raldana-dualsentieon | SNP | * | map_l100_m2_e1 | * | 99.3646 | 99.4032 | 99.3261 | 65.5411 | 74291 | 446 | 74280 | 504 | 23 | 4.5635 | |
| hfeng-pmm1 | SNP | * | map_l100_m2_e1 | * | 99.5878 | 99.3979 | 99.7783 | 64.6489 | 74287 | 450 | 74276 | 165 | 49 | 29.6970 | |
| jli-custom | SNP | * | map_l100_m2_e1 | * | 99.4761 | 99.3323 | 99.6202 | 63.1271 | 74238 | 499 | 74235 | 283 | 79 | 27.9152 | |
| ckim-dragen | SNP | * | map_l100_m2_e1 | * | 98.6686 | 99.2949 | 98.0501 | 69.8284 | 74210 | 527 | 74221 | 1476 | 153 | 10.3659 | |
| rpoplin-dv42 | SNP | * | map_l100_m2_e1 | * | 99.4091 | 99.2775 | 99.5411 | 65.1919 | 74197 | 540 | 74186 | 342 | 199 | 58.1871 | |
| egarrison-hhga | SNP | * | map_l100_m2_e1 | * | 99.5464 | 99.2547 | 99.8398 | 64.7282 | 74180 | 557 | 74181 | 119 | 50 | 42.0168 | |
| gduggal-bwafb | SNP | * | map_l100_m2_e1 | * | 99.0356 | 99.1356 | 98.9358 | 69.1822 | 74091 | 646 | 74093 | 797 | 164 | 20.5772 | |
| jlack-gatk | SNP | * | map_l100_m2_e1 | * | 97.0682 | 99.1343 | 95.0864 | 75.5739 | 74090 | 647 | 74079 | 3828 | 292 | 7.6280 | |
| astatham-gatk | SNP | * | map_siren | het | 89.6918 | 81.4059 | 99.8557 | 63.3177 | 74072 | 16919 | 74058 | 107 | 41 | 38.3178 | |
| ghariani-varprowl | SNP | * | map_l100_m2_e1 | * | 98.3564 | 99.0460 | 97.6764 | 72.0101 | 74024 | 713 | 74027 | 1761 | 324 | 18.3986 | |
| ndellapenna-hhga | SNP | * | map_l100_m2_e1 | * | 99.3413 | 98.8761 | 99.8109 | 63.7314 | 73897 | 840 | 73899 | 140 | 63 | 45.0000 | |
| ltrigg-rtg1 | SNP | * | map_l100_m2_e1 | * | 99.3071 | 98.8520 | 99.7664 | 59.3097 | 73879 | 858 | 73876 | 173 | 38 | 21.9653 | |
| ltrigg-rtg2 | SNP | * | map_l100_m2_e1 | * | 99.2263 | 98.6673 | 99.7916 | 56.2116 | 73741 | 996 | 73738 | 154 | 24 | 15.5844 | |
| hfeng-pmm3 | SNP | * | map_l100_m2_e0 | * | 99.6651 | 99.5917 | 99.7386 | 65.1842 | 73662 | 302 | 73651 | 193 | 31 | 16.0622 | |
| bgallagher-sentieon | SNP | * | map_l100_m2_e0 | * | 99.4275 | 99.5674 | 99.2880 | 67.0766 | 73644 | 320 | 73633 | 528 | 81 | 15.3409 | |
| hfeng-pmm2 | SNP | * | map_l100_m2_e0 | * | 99.5209 | 99.5633 | 99.4785 | 67.6209 | 73641 | 323 | 73630 | 386 | 47 | 12.1762 | |
| dgrover-gatk | SNP | * | map_l100_m2_e0 | * | 99.4963 | 99.4795 | 99.5130 | 68.3628 | 73579 | 385 | 73568 | 360 | 79 | 21.9444 | |
| raldana-dualsentieon | SNP | * | map_l100_m2_e0 | * | 99.3627 | 99.3970 | 99.3284 | 65.5143 | 73518 | 446 | 73507 | 497 | 23 | 4.6278 | |
| hfeng-pmm1 | SNP | * | map_l100_m2_e0 | * | 99.5855 | 99.3929 | 99.7787 | 64.6417 | 73515 | 449 | 73504 | 163 | 49 | 30.0613 | |
| jli-custom | SNP | * | map_l100_m2_e0 | * | 99.4726 | 99.3267 | 99.6190 | 63.1033 | 73466 | 498 | 73463 | 281 | 79 | 28.1139 | |
| ckim-dragen | SNP | * | map_l100_m2_e0 | * | 98.6634 | 99.2943 | 98.0406 | 69.7855 | 73442 | 522 | 73453 | 1468 | 152 | 10.3542 | |
| rpoplin-dv42 | SNP | * | map_l100_m2_e0 | * | 99.4070 | 99.2740 | 99.5404 | 65.1757 | 73427 | 537 | 73416 | 339 | 198 | 58.4071 | |
| egarrison-hhga | SNP | * | map_l100_m2_e0 | * | 99.5430 | 99.2483 | 99.8395 | 64.7214 | 73408 | 556 | 73409 | 118 | 50 | 42.3729 | |
| gduggal-bwafb | SNP | * | map_l100_m2_e0 | * | 99.0302 | 99.1280 | 98.9327 | 69.1496 | 73319 | 645 | 73321 | 791 | 163 | 20.6068 | |
| jlack-gatk | SNP | * | map_l100_m2_e0 | * | 97.0473 | 99.1293 | 95.0510 | 75.5620 | 73320 | 644 | 73309 | 3817 | 291 | 7.6238 | |
| ghariani-varprowl | SNP | * | map_l100_m2_e0 | * | 98.3520 | 99.0401 | 97.6734 | 71.9819 | 73254 | 710 | 73257 | 1745 | 322 | 18.4527 | |
| ndellapenna-hhga | SNP | * | map_l100_m2_e0 | * | 99.3385 | 98.8697 | 99.8117 | 63.7221 | 73128 | 836 | 73130 | 138 | 63 | 45.6522 | |
| gduggal-snapfb | SNP | * | map_l100_m2_e1 | * | 97.7287 | 97.8404 | 97.6173 | 69.6430 | 73123 | 1614 | 73129 | 1785 | 689 | 38.5994 | |
| gduggal-snapvard | INDEL | * | HG002complexvar | * | 84.5803 | 84.0929 | 85.0735 | 55.5785 | 64696 | 12238 | 73113 | 12828 | 8678 | 67.6489 | |
| ltrigg-rtg1 | SNP | * | map_l100_m2_e0 | * | 99.3059 | 98.8413 | 99.7748 | 59.2762 | 73107 | 857 | 73104 | 165 | 38 | 23.0303 | |
| jpowers-varprowl | SNP | * | map_l100_m2_e1 | * | 98.0534 | 97.7615 | 98.3471 | 71.6291 | 73064 | 1673 | 73066 | 1228 | 334 | 27.1987 | |
| cchapple-custom | SNP | * | map_l100_m2_e1 | * | 97.5551 | 97.7575 | 97.3536 | 69.9828 | 73061 | 1676 | 73060 | 1986 | 410 | 20.6445 | |
| ltrigg-rtg2 | SNP | * | map_l100_m2_e0 | * | 99.2235 | 98.6534 | 99.8003 | 56.1674 | 72968 | 996 | 72965 | 146 | 24 | 16.4384 | |
| gduggal-snapfb | SNP | * | map_l100_m2_e0 | * | 97.7110 | 97.8206 | 97.6017 | 69.6113 | 72352 | 1612 | 72358 | 1778 | 689 | 38.7514 | |
| mlin-fermikit | INDEL | * | HG002complexvar | * | 95.4305 | 94.5346 | 96.3436 | 54.3245 | 72733 | 4205 | 72356 | 2746 | 2618 | 95.3387 | |
| jpowers-varprowl | SNP | * | map_l100_m2_e0 | * | 98.0473 | 97.7530 | 98.3434 | 71.6108 | 72302 | 1662 | 72304 | 1218 | 332 | 27.2578 | |
| cchapple-custom | SNP | * | map_l100_m2_e0 | * | 97.5457 | 97.7435 | 97.3487 | 69.9609 | 72295 | 1669 | 72297 | 1969 | 408 | 20.7212 | |
| eyeh-varpipe | SNP | * | map_l100_m2_e1 | * | 98.6948 | 99.7404 | 97.6710 | 69.5344 | 74543 | 194 | 72256 | 1723 | 51 | 2.9600 | |
| hfeng-pmm3 | SNP | * | map_l100_m1_e0 | * | 99.6620 | 99.5870 | 99.7371 | 63.4436 | 72104 | 299 | 72093 | 190 | 31 | 16.3158 | |
| bgallagher-sentieon | SNP | * | map_l100_m1_e0 | * | 99.4317 | 99.5636 | 99.3001 | 65.4224 | 72087 | 316 | 72076 | 508 | 81 | 15.9449 | |
| hfeng-pmm2 | SNP | * | map_l100_m1_e0 | * | 99.5195 | 99.5580 | 99.4810 | 66.0017 | 72083 | 320 | 72072 | 376 | 47 | 12.5000 | |
| dgrover-gatk | SNP | * | map_l100_m1_e0 | * | 99.4999 | 99.4779 | 99.5218 | 66.8041 | 72025 | 378 | 72014 | 346 | 78 | 22.5434 | |
| raldana-dualsentieon | SNP | * | map_l100_m1_e0 | * | 99.3579 | 99.3895 | 99.3263 | 63.6563 | 71961 | 442 | 71950 | 488 | 23 | 4.7131 | |
| hfeng-pmm1 | SNP | * | map_l100_m1_e0 | * | 99.5814 | 99.3868 | 99.7767 | 62.8958 | 71959 | 444 | 71948 | 161 | 49 | 30.4348 | |