PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
10051-10100 / 86044 show all | |||||||||||||||
| bgallagher-sentieon | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 97.7706 | 98.9737 | 96.5965 | 71.2228 | 5786 | 60 | 5733 | 202 | 187 | 92.5743 | |
| bgallagher-sentieon | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 97.7706 | 98.9737 | 96.5965 | 71.2228 | 5786 | 60 | 5733 | 202 | 187 | 92.5743 | |
| qzeng-custom | INDEL | * | * | hetalt | 86.3714 | 76.5503 | 99.0835 | 60.3958 | 19319 | 5918 | 5730 | 53 | 41 | 77.3585 | |
| gduggal-snapfb | INDEL | D6_15 | HG002compoundhet | het | 60.7617 | 44.3925 | 96.2540 | 19.2156 | 380 | 476 | 5730 | 223 | 211 | 94.6188 | |
| ckim-vqsr | SNP | tv | map_l150_m2_e1 | * | 66.1510 | 49.8261 | 98.3860 | 92.1390 | 5731 | 5771 | 5730 | 94 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 93.4915 | 90.6675 | 96.4971 | 60.4318 | 5732 | 590 | 5730 | 208 | 164 | 78.8462 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 93.4915 | 90.6675 | 96.4971 | 60.4318 | 5732 | 590 | 5730 | 208 | 164 | 78.8462 | |
| astatham-gatk | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 97.8685 | 95.8740 | 99.9477 | 63.1785 | 5693 | 245 | 5729 | 3 | 3 | 100.0000 | |
| mlin-fermikit | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 93.3394 | 94.5919 | 92.1197 | 68.0226 | 5772 | 330 | 5728 | 490 | 477 | 97.3469 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 93.9710 | 90.6042 | 97.5975 | 61.3424 | 5728 | 594 | 5728 | 141 | 133 | 94.3262 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 93.9710 | 90.6042 | 97.5975 | 61.3424 | 5728 | 594 | 5728 | 141 | 133 | 94.3262 | |
| ckim-vqsr | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 97.8690 | 98.8710 | 96.8872 | 72.0428 | 5780 | 66 | 5727 | 184 | 169 | 91.8478 | |
| ckim-vqsr | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 97.8690 | 98.8710 | 96.8872 | 72.0428 | 5780 | 66 | 5727 | 184 | 169 | 91.8478 | |
| astatham-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 98.0053 | 96.4936 | 99.5651 | 50.8758 | 5724 | 208 | 5724 | 25 | 23 | 92.0000 | |
| gduggal-bwaplat | SNP | ti | map_l125_m2_e0 | homalt | 67.0606 | 50.4578 | 99.9476 | 79.7932 | 5731 | 5627 | 5724 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 52.8397 | 49.0718 | 57.2344 | 61.3327 | 4943 | 5130 | 5716 | 4271 | 3848 | 90.0960 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 95.3424 | 98.3065 | 92.5518 | 69.4000 | 5747 | 99 | 5716 | 460 | 444 | 96.5217 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 95.3424 | 98.3065 | 92.5518 | 69.4000 | 5747 | 99 | 5716 | 460 | 444 | 96.5217 | |
| mlin-fermikit | INDEL | * | map_siren | * | 83.8340 | 77.0310 | 91.9549 | 78.2144 | 5708 | 1702 | 5715 | 500 | 406 | 81.2000 | |
| mlin-fermikit | SNP | ti | map_l100_m0_e0 | het | 57.7466 | 40.8496 | 98.4828 | 55.5044 | 5712 | 8271 | 5712 | 88 | 4 | 4.5455 | |
| gduggal-snapplat | INDEL | * | map_siren | * | 79.6077 | 71.8219 | 89.2868 | 89.6136 | 5322 | 2088 | 5709 | 685 | 78 | 11.3869 | |
| hfeng-pmm2 | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 97.7089 | 95.5204 | 100.0000 | 63.1123 | 5672 | 266 | 5708 | 0 | 0 | ||
| gduggal-bwavard | SNP | tv | map_l125_m1_e0 | homalt | 98.7755 | 97.7645 | 99.8076 | 66.5926 | 5729 | 131 | 5706 | 11 | 9 | 81.8182 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 97.5285 | 98.5118 | 96.5646 | 71.5859 | 5759 | 87 | 5706 | 203 | 191 | 94.0887 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 97.5285 | 98.5118 | 96.5646 | 71.5859 | 5759 | 87 | 5706 | 203 | 191 | 94.0887 | |
| gduggal-snapplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 49.0771 | 33.9479 | 88.5320 | 66.3182 | 5671 | 11034 | 5705 | 739 | 624 | 84.4384 | |
| gduggal-snapplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 49.0771 | 33.9479 | 88.5320 | 66.3182 | 5671 | 11034 | 5705 | 739 | 624 | 84.4384 | |
| ciseli-custom | SNP | * | map_l125_m0_e0 | homalt | 85.9540 | 85.1609 | 86.7620 | 68.6495 | 5716 | 996 | 5702 | 870 | 708 | 81.3793 | |
| ckim-gatk | SNP | ti | map_l125_m0_e0 | het | 80.6416 | 69.0185 | 96.9723 | 90.3096 | 5703 | 2560 | 5701 | 178 | 22 | 12.3596 | |
| egarrison-hhga | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 97.4215 | 95.7225 | 99.1819 | 60.8518 | 5684 | 254 | 5698 | 47 | 44 | 93.6170 | |
| hfeng-pmm1 | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 97.6119 | 95.3351 | 100.0000 | 63.4087 | 5661 | 277 | 5698 | 0 | 0 | ||
| ciseli-custom | SNP | ti | map_l150_m0_e0 | * | 76.8096 | 72.5099 | 81.6514 | 84.8420 | 5700 | 2161 | 5696 | 1280 | 329 | 25.7031 | |
| hfeng-pmm2 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 97.8606 | 96.0047 | 99.7897 | 49.8726 | 5695 | 237 | 5695 | 12 | 11 | 91.6667 | |
| gduggal-bwaplat | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 91.1118 | 85.3688 | 97.6832 | 88.4817 | 5683 | 974 | 5692 | 135 | 24 | 17.7778 | |
| bgallagher-sentieon | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 97.6664 | 95.9541 | 99.4410 | 50.6296 | 5692 | 240 | 5692 | 32 | 30 | 93.7500 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 98.2308 | 97.0167 | 99.4755 | 56.4489 | 5561 | 171 | 5690 | 30 | 15 | 50.0000 | |
| ckim-isaac | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 90.1406 | 89.3302 | 90.9658 | 70.1878 | 5735 | 685 | 5689 | 565 | 335 | 59.2920 | |
| ckim-isaac | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 90.1406 | 89.3302 | 90.9658 | 70.1878 | 5735 | 685 | 5689 | 565 | 335 | 59.2920 | |
| jmaeng-gatk | SNP | ti | map_l125_m0_e0 | het | 80.4521 | 68.8612 | 96.7347 | 90.5884 | 5690 | 2573 | 5688 | 192 | 21 | 10.9375 | |
| gduggal-snapplat | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 44.8798 | 37.6755 | 55.4905 | 73.6943 | 4185 | 6923 | 5685 | 4560 | 444 | 9.7368 | |
| asubramanian-gatk | SNP | * | map_l150_m2_e1 | het | 43.6280 | 27.9330 | 99.5796 | 95.1225 | 5688 | 14675 | 5685 | 24 | 6 | 25.0000 | |
| ciseli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 44.7752 | 41.0011 | 49.3146 | 53.2015 | 5652 | 8133 | 5684 | 5842 | 5100 | 87.2989 | |
| egarrison-hhga | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 97.2212 | 95.8530 | 98.6289 | 40.6591 | 5686 | 246 | 5683 | 79 | 58 | 73.4177 | |
| bgallagher-sentieon | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 97.4365 | 95.0488 | 99.9472 | 61.8862 | 5644 | 294 | 5679 | 3 | 3 | 100.0000 | |
| jli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 98.2104 | 98.0157 | 98.4058 | 67.0172 | 5730 | 116 | 5679 | 92 | 83 | 90.2174 | |
| jli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 98.2104 | 98.0157 | 98.4058 | 67.0172 | 5730 | 116 | 5679 | 92 | 83 | 90.2174 | |
| ckim-dragen | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 97.5871 | 95.8024 | 99.4396 | 50.7631 | 5683 | 249 | 5678 | 32 | 30 | 93.7500 | |
| hfeng-pmm1 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 97.7028 | 95.7181 | 99.7716 | 48.9962 | 5678 | 254 | 5678 | 13 | 10 | 76.9231 | |
| jlack-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 95.6615 | 97.9986 | 93.4332 | 70.5962 | 5729 | 117 | 5677 | 399 | 342 | 85.7143 | |
| jlack-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 95.6615 | 97.9986 | 93.4332 | 70.5962 | 5729 | 117 | 5677 | 399 | 342 | 85.7143 | |