PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
951-1000 / 86044 show all | |||||||||||||||
| gduggal-bwaplat | SNP | * | map_siren | het | 92.3406 | 86.3635 | 99.2066 | 74.9301 | 78583 | 12408 | 78653 | 629 | 157 | 24.9603 | |
| ckim-dragen | INDEL | I1_5 | * | het | 99.4703 | 99.6091 | 99.3319 | 60.8221 | 78732 | 309 | 78650 | 529 | 129 | 24.3856 | |
| jmaeng-gatk | INDEL | I1_5 | * | het | 99.3909 | 99.5129 | 99.2691 | 62.3588 | 78656 | 385 | 78640 | 579 | 142 | 24.5250 | |
| ckim-vqsr | INDEL | I1_5 | * | het | 99.5998 | 99.5116 | 99.6881 | 61.9903 | 78655 | 386 | 78634 | 246 | 145 | 58.9431 | |
| jlack-gatk | INDEL | I1_5 | * | het | 99.1970 | 99.4952 | 98.9006 | 61.6913 | 78642 | 399 | 78625 | 874 | 231 | 26.4302 | |
| hfeng-pmm2 | INDEL | I1_5 | * | het | 99.6023 | 99.4952 | 99.7096 | 59.9116 | 78642 | 399 | 78624 | 229 | 130 | 56.7686 | |
| jli-custom | INDEL | I1_5 | * | het | 99.6300 | 99.4800 | 99.7804 | 58.4682 | 78630 | 411 | 78600 | 173 | 112 | 64.7399 | |
| astatham-gatk | INDEL | I1_5 | * | het | 99.5857 | 99.4610 | 99.7107 | 60.4880 | 78615 | 426 | 78596 | 228 | 141 | 61.8421 | |
| gduggal-bwaplat | INDEL | D1_5 | * | het | 94.1987 | 89.7070 | 99.1640 | 66.4739 | 78560 | 9014 | 78527 | 662 | 219 | 33.0816 | |
| egarrison-hhga | INDEL | I1_5 | * | het | 99.4365 | 99.3775 | 99.4956 | 58.7039 | 78549 | 492 | 78511 | 398 | 185 | 46.4824 | |
| raldana-dualsentieon | INDEL | I1_5 | * | het | 99.5073 | 99.2827 | 99.7331 | 57.9285 | 78474 | 567 | 78457 | 210 | 142 | 67.6190 | |
| cchapple-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.6609 | 96.7085 | 98.6322 | 60.0245 | 63200 | 2151 | 78454 | 1088 | 926 | 85.1103 | |
| cchapple-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 97.6609 | 96.7085 | 98.6322 | 60.0245 | 63200 | 2151 | 78454 | 1088 | 926 | 85.1103 | |
| ndellapenna-hhga | INDEL | I1_5 | * | het | 99.3796 | 99.2245 | 99.5353 | 57.8169 | 78428 | 613 | 78394 | 366 | 178 | 48.6339 | |
| ghariani-varprowl | INDEL | I1_5 | * | het | 92.7410 | 98.8133 | 87.3718 | 65.8570 | 78102 | 938 | 78120 | 11291 | 10122 | 89.6466 | |
| asubramanian-gatk | INDEL | I1_5 | * | het | 99.1412 | 98.6564 | 99.6308 | 61.4273 | 77979 | 1062 | 77980 | 289 | 149 | 51.5571 | |
| qzeng-custom | SNP | * | map_siren | het | 92.1648 | 86.4602 | 98.6753 | 68.8551 | 78671 | 12320 | 77914 | 1046 | 710 | 67.8776 | |
| ltrigg-rtg2 | INDEL | I1_5 | * | het | 99.5106 | 99.4497 | 99.5716 | 56.0879 | 78606 | 435 | 77868 | 335 | 92 | 27.4627 | |
| ltrigg-rtg1 | INDEL | I1_5 | * | het | 99.3128 | 98.9158 | 99.7130 | 54.8506 | 78184 | 857 | 77471 | 223 | 56 | 25.1121 | |
| qzeng-custom | INDEL | * | HG002complexvar | * | 97.6731 | 97.4200 | 97.9274 | 54.9567 | 74953 | 1985 | 77253 | 1635 | 731 | 44.7095 | |
| ckim-isaac | INDEL | I1_5 | * | het | 97.5134 | 97.3900 | 97.6371 | 50.7018 | 76978 | 2063 | 77021 | 1864 | 1391 | 74.6245 | |
| eyeh-varpipe | INDEL | I1_5 | * | het | 97.6534 | 97.4342 | 97.8735 | 52.4121 | 77013 | 2028 | 76909 | 1671 | 1507 | 90.1855 | |
| gduggal-bwavard | INDEL | I1_5 | * | het | 92.1214 | 97.7872 | 87.0762 | 61.9735 | 77292 | 1749 | 76863 | 11408 | 10744 | 94.1795 | |
| ciseli-custom | SNP | * | map_siren | het | 87.4519 | 84.7172 | 90.3691 | 62.2108 | 77085 | 13906 | 76849 | 8190 | 211 | 2.5763 | |
| mlin-fermikit | INDEL | I1_5 | * | het | 97.2425 | 97.2166 | 97.2684 | 53.2963 | 76841 | 2200 | 76701 | 2154 | 2108 | 97.8644 | |
| ckim-vqsr | SNP | ti | map_siren | * | 86.3605 | 76.1935 | 99.6585 | 68.7036 | 76464 | 23891 | 76451 | 262 | 25 | 9.5420 | |
| dgrover-gatk | INDEL | * | HG002complexvar | * | 99.5612 | 99.4476 | 99.6751 | 58.4475 | 76513 | 425 | 76380 | 249 | 210 | 84.3373 | |
| bgallagher-sentieon | INDEL | * | HG002complexvar | * | 99.4954 | 99.3774 | 99.6137 | 58.2041 | 76459 | 479 | 76328 | 296 | 257 | 86.8243 | |
| cchapple-custom | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 98.8427 | 98.3427 | 99.3479 | 69.0114 | 47471 | 800 | 76325 | 501 | 389 | 77.6447 | |
| astatham-gatk | INDEL | * | HG002complexvar | * | 99.4827 | 99.2916 | 99.6745 | 58.3541 | 76393 | 545 | 76257 | 249 | 212 | 85.1406 | |
| jlack-gatk | INDEL | * | HG002complexvar | * | 99.2231 | 99.0863 | 99.3603 | 58.0205 | 76235 | 703 | 76113 | 490 | 357 | 72.8571 | |
| ckim-gatk | INDEL | * | HG002complexvar | * | 99.3276 | 99.0226 | 99.6345 | 58.1713 | 76186 | 752 | 76048 | 279 | 226 | 81.0036 | |
| ckim-dragen | INDEL | * | HG002complexvar | * | 99.3944 | 99.2565 | 99.5327 | 58.0987 | 76366 | 572 | 76037 | 357 | 301 | 84.3137 | |
| mlin-fermikit | SNP | ti | map_siren | * | 84.2869 | 75.7361 | 95.0143 | 45.5372 | 76005 | 24350 | 76001 | 3988 | 3501 | 87.7884 | |
| ckim-isaac | SNP | ti | map_siren | * | 86.1284 | 75.6983 | 99.8922 | 49.9174 | 75967 | 24388 | 75975 | 82 | 16 | 19.5122 | |
| jmaeng-gatk | INDEL | * | HG002complexvar | * | 99.2404 | 98.8731 | 99.6104 | 58.2744 | 76071 | 867 | 75939 | 297 | 248 | 83.5017 | |
| ckim-vqsr | INDEL | * | HG002complexvar | * | 99.2578 | 98.8640 | 99.6548 | 58.2159 | 76064 | 874 | 75924 | 263 | 222 | 84.4106 | |
| rpoplin-dv42 | INDEL | * | HG002complexvar | * | 98.9923 | 98.6301 | 99.3571 | 63.4999 | 75884 | 1054 | 75884 | 491 | 440 | 89.6130 | |
| jli-custom | INDEL | * | HG002complexvar | * | 99.2454 | 98.7574 | 99.7382 | 56.8994 | 75982 | 956 | 75827 | 199 | 151 | 75.8794 | |
| hfeng-pmm3 | INDEL | * | HG002complexvar | * | 99.1462 | 98.5027 | 99.7982 | 57.0316 | 75786 | 1152 | 75648 | 153 | 115 | 75.1634 | |
| hfeng-pmm1 | INDEL | * | HG002complexvar | * | 99.1357 | 98.4949 | 99.7850 | 57.1428 | 75780 | 1158 | 75642 | 163 | 121 | 74.2331 | |
| hfeng-pmm2 | INDEL | * | HG002complexvar | * | 99.1003 | 98.4520 | 99.7572 | 57.3339 | 75747 | 1191 | 75614 | 184 | 143 | 77.7174 | |
| asubramanian-gatk | INDEL | * | HG002complexvar | * | 98.8559 | 98.4299 | 99.2857 | 62.5855 | 75730 | 1208 | 75611 | 544 | 244 | 44.8529 | |
| ltrigg-rtg2 | INDEL | * | HG002complexvar | * | 98.9919 | 98.4780 | 99.5112 | 54.8986 | 75766 | 1171 | 75523 | 371 | 227 | 61.1860 | |
| raldana-dualsentieon | INDEL | * | HG002complexvar | * | 98.9594 | 98.2323 | 99.6974 | 57.2556 | 75578 | 1360 | 75441 | 229 | 196 | 85.5895 | |
| ltrigg-rtg1 | INDEL | * | HG002complexvar | * | 98.8636 | 98.1465 | 99.5912 | 55.0476 | 75511 | 1426 | 75278 | 309 | 190 | 61.4887 | |
| ckim-vqsr | SNP | * | map_siren | het | 90.3081 | 82.7379 | 99.4031 | 73.7019 | 75284 | 15707 | 75273 | 452 | 26 | 5.7522 | |
| jpowers-varprowl | INDEL | I1_5 | * | het | 91.4249 | 95.2000 | 87.9379 | 62.1984 | 75247 | 3794 | 75259 | 10323 | 10077 | 97.6170 | |
| ciseli-custom | INDEL | I1_5 | * | het | 91.4560 | 94.1106 | 88.9472 | 61.0454 | 74385 | 4655 | 74801 | 9295 | 7503 | 80.7208 | |
| egarrison-hhga | INDEL | * | HG002complexvar | * | 97.4540 | 96.9352 | 97.9784 | 67.1267 | 74580 | 2358 | 74541 | 1538 | 1113 | 72.3667 | |