PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 3 4 5 6 ... 1720 1721 » 51-100 / 86044 show all
cchapple-custom	SNP	ti	*	*	99.8773	99.8866	99.8679	19.3368	2083147	2364	2081936	2754	477	17.3203
ndellapenna-hhga	SNP	ti	*	*	99.8903	99.8233	99.9574	16.8793	2081825	3686	2081847	888	298	33.5586
jpowers-varprowl	SNP	ti	*	*	99.5767	99.5483	99.6052	21.1558	2076086	9421	2076295	8230	1307	15.8809
ckim-gatk	SNP	ti	*	*	99.6817	99.5154	99.8485	21.6609	2075404	10107	2075345	3148	170	5.4003
jmaeng-gatk	SNP	ti	*	*	99.6502	99.4959	99.8049	21.8521	2074998	10513	2074939	4056	178	4.3886
astatham-gatk	SNP	ti	*	*	99.6161	99.2515	99.9833	17.5605	2069900	15611	2069836	345	101	29.2754
gduggal-snapplat	SNP	ti	*	*	99.1814	98.9158	99.4485	24.4080	2062907	22611	2063333	11443	1808	15.8001
qzeng-custom	SNP	ti	*	*	99.5194	99.2515	99.7887	20.8361	2069907	15611	2063126	4368	997	22.8251
eyeh-varpipe	SNP	ti	*	*	99.7598	99.9651	99.5553	19.0734	2084791	727	2061083	9206	307	3.3348
ckim-vqsr	SNP	ti	*	*	99.3455	98.7474	99.9510	21.8102	2059387	26124	2059330	1009	89	8.8206
ciseli-custom	SNP	ti	*	*	98.3062	98.8974	97.7221	19.7040	2062524	22994	2057571	47963	7893	16.4564
gduggal-bwavard	SNP	ti	*	*	99.3434	99.0343	99.6545	21.4644	2065379	20139	2057255	7133	2188	30.6743
gduggal-snapvard	SNP	ti	*	*	99.1158	98.9272	99.3052	22.3384	2063143	22374	2054412	14373	2372	16.5032
gduggal-bwaplat	SNP	ti	*	*	99.0047	98.3196	99.6994	24.2468	2050467	35044	2050804	6183	880	14.2326
mlin-fermikit	SNP	ti	*	*	98.9073	98.2768	99.5460	14.9446	2049581	35937	2049572	9348	8085	86.4891
asubramanian-gatk	SNP	ti	*	*	99.0306	98.1234	99.9548	19.2315	2046375	39136	2046316	926	90	9.7192
anovak-vg	SNP	ti	*	*	98.4812	98.2960	98.6672	19.8346	2049980	35538	2043729	27607	12786	46.3143
ckim-isaac	SNP	ti	*	*	98.6272	97.3318	99.9576	14.8667	2029873	55645	2030218	862	462	53.5963
ckim-dragen	SNP	*	*	het	99.7355	99.9519	99.5199	24.5349	1872686	901	1873038	9035	444	4.9142
bgallagher-sentieon	SNP	*	*	het	99.8943	99.9607	99.8280	19.9469	1872851	736	1872726	3227	129	3.9975
dgrover-gatk	SNP	*	*	het	99.9216	99.9564	99.8868	20.4479	1872770	817	1872645	2122	144	6.7861
jli-custom	SNP	*	*	het	99.9088	99.9498	99.8677	18.9256	1872647	940	1872558	2480	145	5.8468
jlack-gatk	SNP	*	*	het	99.5639	99.9321	99.1985	27.0831	1872315	1272	1872190	15127	441	2.9153
rpoplin-dv42	SNP	*	*	het	99.9475	99.9278	99.9673	19.5765	1872234	1353	1872094	613	268	43.7194
cchapple-custom	SNP	*	*	het	99.7822	99.8765	99.6880	23.4490	1871274	2313	1871921	5859	675	11.5207
hfeng-pmm3	SNP	*	*	het	99.9317	99.8994	99.9639	18.5779	1871702	1885	1871578	675	30	4.4444
hfeng-pmm2	SNP	*	*	het	99.9111	99.8854	99.9369	19.2150	1871439	2148	1871315	1181	42	3.5563
ghariani-varprowl	SNP	*	*	het	99.0974	99.8581	98.3482	28.2380	1870907	2659	1871294	31430	431	1.3713
hfeng-pmm1	SNP	*	*	het	99.9238	99.8812	99.9665	18.1036	1871361	2226	1871236	628	48	7.6433
gduggal-bwafb	SNP	*	*	het	99.6957	99.8616	99.5303	23.9839	1871007	2594	1871215	8830	595	6.7384
ltrigg-rtg1	SNP	*	*	het	99.8185	99.8570	99.7799	17.5567	1870919	2679	1871167	4127	102	2.4715
ltrigg-rtg2	SNP	*	*	het	99.8157	99.8572	99.7742	16.9842	1870922	2676	1871158	4235	135	3.1877
raldana-dualsentieon	SNP	*	*	het	99.8865	99.8694	99.9036	19.2179	1871141	2446	1871016	1806	43	2.3810
gduggal-snapfb	SNP	*	*	het	98.9809	99.8048	98.1706	24.8638	1869943	3658	1870819	34863	1567	4.4947
egarrison-hhga	SNP	*	*	het	99.8773	99.8048	99.9499	18.3927	1869930	3657	1869954	938	124	13.2196
ndellapenna-hhga	SNP	*	*	het	99.8554	99.7670	99.9441	18.2036	1869221	4366	1869241	1046	128	12.2371
ckim-gatk	SNP	*	*	het	99.6800	99.6561	99.7039	26.8036	1867144	6443	1867021	5544	194	3.4993
jmaeng-gatk	SNP	*	*	het	99.6262	99.6225	99.6299	27.1537	1866514	7073	1866391	6934	179	2.5815
jpowers-varprowl	SNP	*	*	het	99.3161	99.3290	99.3033	25.1238	1861010	12572	1861335	13059	459	3.5148
ckim-vqsr	SNP	*	*	het	99.4736	99.0611	99.8894	26.9578	1855996	17591	1855876	2054	101	4.9172
qzeng-custom	SNP	*	*	het	99.4239	99.1899	99.6590	25.4299	1858423	15178	1850061	6331	818	12.9205
astatham-gatk	SNP	*	*	het	99.3521	98.7393	99.9725	20.1637	1849967	23620	1849845	508	95	18.7008
gduggal-snapplat	SNP	*	*	het	98.7739	98.5851	98.9633	30.9812	1847092	26509	1848114	19360	2442	12.6136
gduggal-bwavard	SNP	*	*	het	99.2301	99.0784	99.3822	26.2938	1856334	17267	1845056	11469	3208	27.9711
gduggal-snapvard	SNP	*	*	het	98.8907	98.9717	98.8098	27.4520	1854334	19266	1842523	22194	3216	14.4904
gduggal-bwaplat	SNP	*	*	het	98.8209	98.1336	99.5179	30.8495	1838619	34968	1839500	8912	1113	12.4888
asubramanian-gatk	SNP	*	*	het	98.9725	98.1066	99.8538	23.0377	1838113	35474	1837999	2691	109	4.0505
eyeh-varpipe	SNP	*	*	het	99.1531	99.9599	98.3592	21.9487	1872850	751	1837471	30653	277	0.9037
ciseli-custom	SNP	*	*	het	97.1375	98.3979	95.9090	22.9747	1843584	30017	1837235	78367	939	1.1982
mlin-fermikit	SNP	*	*	het	98.7978	97.7460	99.8724	15.9070	1831370	42231	1831279	2340	46	1.9658

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge