PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TP Query FPFP gt% FP ma
51-100 / 86044 show all
cchapple-customSNPti**
99.8773
99.8866
99.8679
19.3368
2083147236420819362754477
17.3203
ndellapenna-hhgaSNPti**
99.8903
99.8233
99.9574
16.8793
208182536862081847888298
33.5586
jpowers-varprowlSNPti**
99.5767
99.5483
99.6052
21.1558
20760869421207629582301307
15.8809
ckim-gatkSNPti**
99.6817
99.5154
99.8485
21.6609
20754041010720753453148170
5.4003
jmaeng-gatkSNPti**
99.6502
99.4959
99.8049
21.8521
20749981051320749394056178
4.3886
astatham-gatkSNPti**
99.6161
99.2515
99.9833
17.5605
2069900156112069836345101
29.2754
gduggal-snapplatSNPti**
99.1814
98.9158
99.4485
24.4080
2062907226112063333114431808
15.8001
qzeng-customSNPti**
99.5194
99.2515
99.7887
20.8361
20699071561120631264368997
22.8251
eyeh-varpipeSNPti**
99.7598
99.9651
99.5553
19.0734
208479172720610839206307
3.3348
ckim-vqsrSNPti**
99.3455
98.7474
99.9510
21.8102
2059387261242059330100989
8.8206
ciseli-customSNPti**
98.3062
98.8974
97.7221
19.7040
2062524229942057571479637893
16.4564
gduggal-bwavardSNPti**
99.3434
99.0343
99.6545
21.4644
206537920139205725571332188
30.6743
gduggal-snapvardSNPti**
99.1158
98.9272
99.3052
22.3384
2063143223742054412143732372
16.5032
gduggal-bwaplatSNPti**
99.0047
98.3196
99.6994
24.2468
20504673504420508046183880
14.2326
mlin-fermikitSNPti**
98.9073
98.2768
99.5460
14.9446
204958135937204957293488085
86.4891
asubramanian-gatkSNPti**
99.0306
98.1234
99.9548
19.2315
204637539136204631692690
9.7192
anovak-vgSNPti**
98.4812
98.2960
98.6672
19.8346
20499803553820437292760712786
46.3143
ckim-isaacSNPti**
98.6272
97.3318
99.9576
14.8667
2029873556452030218862462
53.5963
ckim-dragenSNP**het
99.7355
99.9519
99.5199
24.5349
187268690118730389035444
4.9142
bgallagher-sentieonSNP**het
99.8943
99.9607
99.8280
19.9469
187285173618727263227129
3.9975
dgrover-gatkSNP**het
99.9216
99.9564
99.8868
20.4479
187277081718726452122144
6.7861
jli-customSNP**het
99.9088
99.9498
99.8677
18.9256
187264794018725582480145
5.8468
jlack-gatkSNP**het
99.5639
99.9321
99.1985
27.0831
18723151272187219015127441
2.9153
rpoplin-dv42SNP**het
99.9475
99.9278
99.9673
19.5765
187223413531872094613268
43.7194
cchapple-customSNP**het
99.7822
99.8765
99.6880
23.4490
1871274231318719215859675
11.5207
hfeng-pmm3SNP**het
99.9317
99.8994
99.9639
18.5779
18717021885187157867530
4.4444
hfeng-pmm2SNP**het
99.9111
99.8854
99.9369
19.2150
187143921481871315118142
3.5563
ghariani-varprowlSNP**het
99.0974
99.8581
98.3482
28.2380
18709072659187129431430431
1.3713
hfeng-pmm1SNP**het
99.9238
99.8812
99.9665
18.1036
18713612226187123662848
7.6433
gduggal-bwafbSNP**het
99.6957
99.8616
99.5303
23.9839
1871007259418712158830595
6.7384
ltrigg-rtg1SNP**het
99.8185
99.8570
99.7799
17.5567
1870919267918711674127102
2.4715
ltrigg-rtg2SNP**het
99.8157
99.8572
99.7742
16.9842
1870922267618711584235135
3.1877
raldana-dualsentieonSNP**het
99.8865
99.8694
99.9036
19.2179
187114124461871016180643
2.3810
gduggal-snapfbSNP**het
98.9809
99.8048
98.1706
24.8638
186994336581870819348631567
4.4947
egarrison-hhgaSNP**het
99.8773
99.8048
99.9499
18.3927
186993036571869954938124
13.2196
ndellapenna-hhgaSNP**het
99.8554
99.7670
99.9441
18.2036
1869221436618692411046128
12.2371
ckim-gatkSNP**het
99.6800
99.6561
99.7039
26.8036
1867144644318670215544194
3.4993
jmaeng-gatkSNP**het
99.6262
99.6225
99.6299
27.1537
1866514707318663916934179
2.5815
jpowers-varprowlSNP**het
99.3161
99.3290
99.3033
25.1238
186101012572186133513059459
3.5148
ckim-vqsrSNP**het
99.4736
99.0611
99.8894
26.9578
18559961759118558762054101
4.9172
qzeng-customSNP**het
99.4239
99.1899
99.6590
25.4299
18584231517818500616331818
12.9205
astatham-gatkSNP**het
99.3521
98.7393
99.9725
20.1637
184996723620184984550895
18.7008
gduggal-snapplatSNP**het
98.7739
98.5851
98.9633
30.9812
1847092265091848114193602442
12.6136
gduggal-bwavardSNP**het
99.2301
99.0784
99.3822
26.2938
1856334172671845056114693208
27.9711
gduggal-snapvardSNP**het
98.8907
98.9717
98.8098
27.4520
1854334192661842523221943216
14.4904
gduggal-bwaplatSNP**het
98.8209
98.1336
99.5179
30.8495
183861934968183950089121113
12.4888
asubramanian-gatkSNP**het
98.9725
98.1066
99.8538
23.0377
18381133547418379992691109
4.0505
eyeh-varpipeSNP**het
99.1531
99.9599
98.3592
21.9487
1872850751183747130653277
0.9037
ciseli-customSNP**het
97.1375
98.3979
95.9090
22.9747
184358430017183723578367939
1.1982
mlin-fermikitSNP**het
98.7978
97.7460
99.8724
15.9070
1831370422311831279234046
1.9658