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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TP Query FPFP gt% FP ma
9801-9850 / 86044 show all
ltrigg-rtg2INDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
97.7424
96.3145
99.2132
57.7581
608923360534828
58.3333
bgallagher-sentieonINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331*
97.2443
95.7292
98.8082
63.2331
605227060527363
86.3014
bgallagher-sentieonINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
97.2443
95.7292
98.8082
63.2331
605227060527363
86.3014
asubramanian-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
96.2758
93.3345
99.4086
38.9346
550339360513634
94.4444
asubramanian-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
96.2758
93.3345
99.4086
38.9346
550339360513634
94.4444
eyeh-varpipeINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
46.0787
30.3663
95.4861
59.9469
426197716050286274
95.8042
ckim-vqsrINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331*
97.3373
95.6976
99.0342
63.1411
605027260505949
83.0508
ckim-vqsrINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
97.3373
95.6976
99.0342
63.1411
605027260505949
83.0508
gduggal-snapfbINDELI1_5HG002compoundhethet
76.4321
76.3529
76.5115
47.4370
64920160491857595
32.0409
bgallagher-sentieonSNPtvmap_l125_m2_e1homalt
99.7197
99.5884
99.8514
66.7125
604925604996
66.6667
anovak-vgSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
96.9087
96.8629
96.9546
55.9921
5990194604919095
50.0000
gduggal-bwaplatINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
84.5108
74.7498
97.2039
41.6721
605120446049174172
98.8506
jli-customSNPtvmap_l125_m2_e1homalt
99.7361
99.5719
99.9009
65.9064
604826604865
83.3333
ndellapenna-hhgaSNPtvmap_l125_m2_e1homalt
99.7279
99.5719
99.8844
68.5879
604826604876
85.7143
eyeh-varpipeINDELD6_15lowcmp_SimpleRepeat_diTR_11to50*
67.4226
63.3961
71.9952
36.3292
59963462604423512331
99.1493
bgallagher-sentieonINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.4743
99.4428
99.5058
77.9305
60683460403014
46.6667
dgrover-gatkINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.5152
99.4428
99.5877
78.3498
60683460392511
44.0000
cchapple-customINDEL*lowcmp_SimpleRepeat_quadTR_11to50homalt
99.4894
99.5224
99.4565
52.2754
60432960393333
100.0000
ckim-dragenSNPtvmap_l125_m2_e1homalt
99.5877
99.4238
99.7522
65.1046
60393560391513
86.6667
gduggal-bwaplatINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
83.0248
72.2847
97.5133
68.6969
604323176039154132
85.7143
gduggal-bwaplatINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
83.0248
72.2847
97.5133
68.6969
604323176039154132
85.7143
ckim-gatkINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.4251
99.4428
99.4073
78.7466
60683460383613
36.1111
hfeng-pmm2INDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331*
97.2768
95.4919
99.1297
62.3353
603728560375343
81.1321
hfeng-pmm2INDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
97.2768
95.4919
99.1297
62.3353
603728560375343
81.1321
anovak-vgINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
56.5143
51.2341
63.0078
48.1760
48784643603335422746
77.5268
astatham-gatkINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.4739
99.3445
99.6037
78.1364
60624060322414
58.3333
dgrover-gatkSNPtvmap_l125_m2_e1homalt
99.5624
99.2591
99.8675
67.1759
602945602985
62.5000
ckim-isaacSNPtimap_l125_m2_e0homalt
69.3312
53.0727
99.9503
64.5277
60285330602833
100.0000
rpoplin-dv42INDELI6_15*homalt
97.7056
96.5700
98.8683
48.6914
602521460286968
98.5507
ckim-dragenINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.4656
99.3773
99.5540
78.3693
6064386027277
25.9259
ciseli-customSNP*lowcmp_SimpleRepeat_homopolymer_6to10homalt
97.8177
99.4251
96.2614
56.7778
6053356025234108
46.1538
ckim-vqsrINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.4572
99.2298
99.6856
78.8294
60554760251912
63.1579
rpoplin-dv42INDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
98.3984
98.6070
98.1907
77.5143
6017856024111100
90.0901
jlack-gatkINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.1869
99.2134
99.1605
78.4314
60544860245124
47.0588
ltrigg-rtg2INDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
98.8029
98.7545
98.8513
71.4513
60267660247013
18.5714
ltrigg-rtg1INDEL*lowcmp_SimpleRepeat_quadTR_11to50homalt
99.5211
99.2589
99.7847
51.9691
6027456024138
61.5385
jmaeng-gatkINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.3667
99.1478
99.5866
78.9281
6050526022258
32.0000
qzeng-customSNP*lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.7774
99.7208
99.8342
53.5684
6071176021108
80.0000
ltrigg-rtg2INDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
98.9113
98.1812
99.6524
74.7228
583010860202121
100.0000
gduggal-bwafbSNPtvmap_l125_m2_e1homalt
99.4877
99.1110
99.8673
71.0512
602054602086
75.0000
gduggal-snapvardINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
60.5607
55.5947
66.5009
43.6531
61614921601930322878
94.9208
rpoplin-dv42SNPtvmap_l125_m2_e1homalt
99.4382
99.0780
99.8010
69.8334
60185660181212
100.0000
hfeng-pmm1INDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331*
97.1424
95.1756
99.1922
62.0377
601730560174941
83.6735
hfeng-pmm1INDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
97.1424
95.1756
99.1922
62.0377
601730560174941
83.6735
hfeng-pmm3INDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331*
97.1733
95.1598
99.2739
61.8292
601630660164438
86.3636
hfeng-pmm3INDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
97.1733
95.1598
99.2739
61.8292
601630660164438
86.3636
astatham-gatkSNPtvmap_l125_m2_e1homalt
99.4462
99.0451
99.8506
66.8391
601658601696
66.6667
jmaeng-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331*
96.9463
95.1598
98.8011
63.5083
601630660167359
80.8219
jmaeng-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
96.9463
95.1598
98.8011
63.5083
601630660167359
80.8219
asubramanian-gatkSNP*lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.1659
98.5874
99.7512
54.8686
6002866015153
20.0000