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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
9651-9700 / 86044 show all | |||||||||||||||
| mlin-fermikit | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.0073 | 98.6439 | 99.3734 | 43.8166 | 6183 | 85 | 6185 | 39 | 38 | 97.4359 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 88.0705 | 92.7235 | 83.8622 | 38.1946 | 6193 | 486 | 6184 | 1190 | 1162 | 97.6471 | |
| ndellapenna-hhga | INDEL | D6_15 | * | homalt | 95.9125 | 97.7395 | 94.1526 | 53.1263 | 6183 | 143 | 6183 | 384 | 166 | 43.2292 | |
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 98.3117 | 97.1963 | 99.4531 | 73.3782 | 6240 | 180 | 6183 | 34 | 24 | 70.5882 | |
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 98.3117 | 97.1963 | 99.4531 | 73.3782 | 6240 | 180 | 6183 | 34 | 24 | 70.5882 | |
| dgrover-gatk | INDEL | I16_PLUS | * | * | 97.6461 | 96.9265 | 98.3766 | 71.1206 | 6181 | 196 | 6181 | 102 | 80 | 78.4314 | |
| egarrison-hhga | INDEL | D1_5 | * | hetalt | 77.5745 | 63.8360 | 98.8480 | 70.3665 | 6540 | 3705 | 6178 | 72 | 64 | 88.8889 | |
| asubramanian-gatk | INDEL | I6_15 | * | homalt | 97.0392 | 99.0223 | 95.1340 | 55.6784 | 6178 | 61 | 6178 | 316 | 307 | 97.1519 | |
| ltrigg-rtg2 | INDEL | D6_15 | * | homalt | 99.1477 | 98.4508 | 99.8545 | 42.0407 | 6228 | 98 | 6177 | 9 | 7 | 77.7778 | |
| jlack-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.5086 | 99.8706 | 99.1491 | 56.7671 | 6176 | 8 | 6176 | 53 | 2 | 3.7736 | |
| bgallagher-sentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.7497 | 99.8706 | 99.6290 | 54.7353 | 6176 | 8 | 6176 | 23 | 0 | 0.0000 | |
| dgrover-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.7174 | 99.8545 | 99.5807 | 55.4302 | 6175 | 9 | 6175 | 26 | 1 | 3.8462 | |
| ckim-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.7416 | 99.8545 | 99.6289 | 56.0363 | 6175 | 9 | 6175 | 23 | 2 | 8.6957 | |
| cchapple-custom | INDEL | I6_15 | * | homalt | 98.0872 | 99.5993 | 96.6202 | 48.7819 | 6214 | 25 | 6175 | 216 | 214 | 99.0741 | |
| jmaeng-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.8060 | 99.8383 | 99.7738 | 56.4379 | 6174 | 10 | 6174 | 14 | 1 | 7.1429 | |
| jpowers-varprowl | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 81.6412 | 91.8702 | 73.4619 | 47.8010 | 6170 | 546 | 6173 | 2230 | 2203 | 98.7892 | |
| mlin-fermikit | SNP | * | map_l150_m2_e1 | homalt | 61.0704 | 52.1941 | 73.5845 | 61.1854 | 6173 | 5654 | 6173 | 2216 | 2078 | 93.7726 | |
| gduggal-bwavard | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.1182 | 98.6758 | 99.5645 | 45.6045 | 6185 | 83 | 6173 | 27 | 13 | 48.1481 | |
| gduggal-bwafb | INDEL | D6_15 | * | homalt | 94.1794 | 97.6288 | 90.9654 | 58.3129 | 6176 | 150 | 6172 | 613 | 608 | 99.1843 | |
| mlin-fermikit | INDEL | D6_15 | * | homalt | 93.1078 | 97.2178 | 89.3312 | 62.5603 | 6150 | 176 | 6171 | 737 | 721 | 97.8290 | |
| rpoplin-dv42 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.8463 | 99.7898 | 99.9029 | 55.0600 | 6171 | 13 | 6171 | 6 | 1 | 16.6667 | |
| ckim-vqsr | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.7253 | 99.7898 | 99.6609 | 56.0602 | 6171 | 13 | 6171 | 21 | 2 | 9.5238 | |
| jli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.6527 | 99.7736 | 99.5322 | 54.5761 | 6170 | 14 | 6170 | 29 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I16_PLUS | * | * | 97.4870 | 96.7226 | 98.2635 | 70.9237 | 6168 | 209 | 6168 | 109 | 84 | 77.0642 | |
| ckim-isaac | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 93.8698 | 91.3024 | 96.5857 | 72.7788 | 6078 | 579 | 6167 | 218 | 97 | 44.4954 | |
| gduggal-bwafb | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 95.8251 | 98.5087 | 93.2839 | 75.9171 | 6143 | 93 | 6167 | 444 | 105 | 23.6486 | |
| gduggal-snapvard | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 98.8156 | 98.5801 | 99.0522 | 46.3316 | 6179 | 89 | 6166 | 59 | 7 | 11.8644 | |
| gduggal-bwafb | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 98.4666 | 99.6442 | 97.3165 | 63.6796 | 6162 | 22 | 6165 | 170 | 16 | 9.4118 | |
| hfeng-pmm1 | INDEL | I16_PLUS | * | * | 97.6402 | 96.6756 | 98.6242 | 68.7700 | 6165 | 212 | 6165 | 86 | 59 | 68.6047 | |
| asubramanian-gatk | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 96.9885 | 94.6447 | 99.4513 | 62.5582 | 5620 | 318 | 6163 | 34 | 32 | 94.1176 | |
| eyeh-varpipe | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 91.7238 | 98.6053 | 85.7401 | 86.4136 | 6787 | 96 | 6163 | 1025 | 59 | 5.7561 | |
| ghariani-varprowl | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 96.1761 | 99.4340 | 93.1248 | 68.3364 | 6149 | 35 | 6163 | 455 | 33 | 7.2528 | |
| ckim-gatk | INDEL | I16_PLUS | * | * | 97.3609 | 96.6128 | 98.1207 | 70.7109 | 6161 | 216 | 6161 | 118 | 83 | 70.3390 | |
| egarrison-hhga | INDEL | D1_5 | HG002compoundhet | hetalt | 77.6385 | 63.8117 | 99.1149 | 65.8609 | 6519 | 3697 | 6159 | 55 | 48 | 87.2727 | |
| asubramanian-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.2985 | 99.5634 | 99.0351 | 56.4261 | 6157 | 27 | 6158 | 60 | 1 | 1.6667 | |
| egarrison-hhga | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.6035 | 99.5149 | 99.6923 | 54.6489 | 6154 | 30 | 6156 | 19 | 5 | 26.3158 | |
| hfeng-pmm2 | INDEL | I16_PLUS | * | * | 97.5355 | 96.5031 | 98.5902 | 69.5601 | 6154 | 223 | 6154 | 88 | 61 | 69.3182 | |
| hfeng-pmm3 | INDEL | I16_PLUS | * | * | 97.6899 | 96.4874 | 98.9228 | 68.1825 | 6153 | 224 | 6153 | 67 | 53 | 79.1045 | |
| astatham-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.6839 | 99.4502 | 99.9188 | 54.8820 | 6150 | 34 | 6150 | 5 | 0 | 0.0000 | |
| ndellapenna-hhga | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.4741 | 99.3855 | 99.5628 | 54.8644 | 6146 | 38 | 6148 | 27 | 9 | 33.3333 | |
| gduggal-snapplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 59.6364 | 59.0060 | 60.2804 | 68.5856 | 4357 | 3027 | 6148 | 4051 | 1556 | 38.4103 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 96.7197 | 96.1682 | 97.2776 | 72.3295 | 6174 | 246 | 6146 | 172 | 65 | 37.7907 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 96.7197 | 96.1682 | 97.2776 | 72.3295 | 6174 | 246 | 6146 | 172 | 65 | 37.7907 | |
| hfeng-pmm3 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.6756 | 99.3855 | 99.9675 | 53.7536 | 6146 | 38 | 6146 | 2 | 0 | 0.0000 | |
| hfeng-pmm1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.6595 | 99.3855 | 99.9350 | 53.0212 | 6146 | 38 | 6146 | 4 | 0 | 0.0000 | |
| cchapple-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.6597 | 99.8868 | 99.4337 | 56.4666 | 6177 | 7 | 6145 | 35 | 2 | 5.7143 | |
| raldana-dualsentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.5867 | 99.3693 | 99.8051 | 53.1359 | 6145 | 39 | 6145 | 12 | 0 | 0.0000 | |
| jpowers-varprowl | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 98.5234 | 99.1268 | 97.9273 | 65.2174 | 6130 | 54 | 6142 | 130 | 33 | 25.3846 | |
| ckim-dragen | INDEL | I16_PLUS | * | * | 97.2529 | 96.3306 | 98.1932 | 70.5888 | 6143 | 234 | 6141 | 113 | 94 | 83.1858 | |
| asubramanian-gatk | SNP | ti | map_l125_m1_e0 | het | 50.2744 | 33.6034 | 99.7724 | 92.0217 | 6138 | 12128 | 6136 | 14 | 5 | 35.7143 | |