PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
901-950 / 86044 show all | |||||||||||||||
| ndellapenna-hhga | INDEL | D1_5 | * | het | 97.6637 | 99.1299 | 96.2402 | 54.0039 | 86812 | 762 | 87337 | 3412 | 3186 | 93.3763 | |
| jmaeng-gatk | INDEL | D1_5 | * | het | 99.4941 | 99.6997 | 99.2893 | 60.9724 | 87311 | 263 | 87316 | 625 | 129 | 20.6400 | |
| jli-custom | INDEL | D1_5 | * | het | 99.7840 | 99.7088 | 99.8593 | 56.7542 | 87319 | 255 | 87313 | 123 | 65 | 52.8455 | |
| ckim-vqsr | INDEL | D1_5 | * | het | 99.6940 | 99.6963 | 99.6917 | 60.8657 | 87308 | 266 | 87313 | 270 | 118 | 43.7037 | |
| ckim-dragen | INDEL | D1_5 | * | het | 99.5957 | 99.7625 | 99.4294 | 59.4097 | 87366 | 208 | 87308 | 501 | 64 | 12.7745 | |
| astatham-gatk | INDEL | D1_5 | * | het | 99.6974 | 99.6803 | 99.7145 | 58.9760 | 87294 | 280 | 87301 | 250 | 122 | 48.8000 | |
| jlack-gatk | INDEL | D1_5 | * | het | 99.1283 | 99.6506 | 98.6115 | 59.9642 | 87268 | 306 | 87281 | 1229 | 246 | 20.0163 | |
| gduggal-bwavard | SNP | * | map_siren | het | 96.2598 | 97.0810 | 95.4524 | 69.7950 | 88335 | 2656 | 87233 | 4156 | 368 | 8.8547 | |
| ghariani-varprowl | INDEL | D1_5 | * | het | 92.9952 | 99.3560 | 87.3999 | 64.6847 | 87009 | 564 | 86983 | 12540 | 10606 | 84.5774 | |
| hfeng-pmm3 | INDEL | D1_5 | * | het | 99.5975 | 99.3183 | 99.8783 | 55.2507 | 86977 | 597 | 86982 | 106 | 53 | 50.0000 | |
| hfeng-pmm2 | INDEL | D1_5 | * | het | 99.5604 | 99.3114 | 99.8107 | 56.3200 | 86971 | 603 | 86977 | 165 | 71 | 43.0303 | |
| hfeng-pmm1 | INDEL | D1_5 | * | het | 99.5580 | 99.2715 | 99.8461 | 55.4481 | 86936 | 638 | 86940 | 134 | 51 | 38.0597 | |
| raldana-dualsentieon | INDEL | D1_5 | * | het | 99.5220 | 99.2680 | 99.7773 | 56.3227 | 86933 | 641 | 86937 | 194 | 136 | 70.1031 | |
| ltrigg-rtg2 | INDEL | D1_5 | * | het | 99.5293 | 99.4473 | 99.6114 | 53.9225 | 87090 | 484 | 86889 | 339 | 71 | 20.9440 | |
| mlin-fermikit | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 92.8446 | 92.0624 | 93.6403 | 70.3210 | 86952 | 7497 | 86813 | 5896 | 5729 | 97.1676 | |
| asubramanian-gatk | INDEL | D1_5 | * | het | 99.3754 | 99.1025 | 99.6499 | 59.9427 | 86788 | 786 | 86804 | 305 | 126 | 41.3115 | |
| anovak-vg | INDEL | D1_5 | * | het | 92.1131 | 94.4127 | 89.9228 | 55.4448 | 82681 | 4893 | 86771 | 9724 | 6623 | 68.1098 | |
| gduggal-snapvard | SNP | * | map_siren | het | 95.1967 | 96.5469 | 93.8838 | 69.6200 | 87849 | 3142 | 86743 | 5651 | 524 | 9.2727 | |
| gduggal-snapplat | INDEL | D1_5 | * | het | 85.0942 | 83.0201 | 87.2745 | 66.1285 | 72704 | 14870 | 86462 | 12607 | 2010 | 15.9435 | |
| ltrigg-rtg1 | INDEL | D1_5 | * | het | 99.2847 | 98.8627 | 99.7103 | 52.7629 | 86578 | 996 | 86378 | 251 | 52 | 20.7171 | |
| qzeng-custom | SNP | ti | map_siren | * | 92.5421 | 86.8188 | 99.0732 | 61.8902 | 87127 | 13228 | 86370 | 808 | 570 | 70.5446 | |
| ckim-isaac | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 94.4269 | 92.1672 | 96.8002 | 61.2699 | 87051 | 7398 | 86368 | 2855 | 2059 | 72.1191 | |
| ckim-isaac | SNP | tv | HG002complexvar | homalt | 95.1060 | 90.6877 | 99.9768 | 19.5838 | 86254 | 8857 | 86277 | 20 | 16 | 80.0000 | |
| gduggal-bwavard | INDEL | D1_5 | * | het | 93.4417 | 99.0111 | 88.4655 | 62.3753 | 86708 | 866 | 85823 | 11190 | 9864 | 88.1501 | |
| gduggal-snapfb | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 88.3624 | 85.5319 | 91.3867 | 71.3799 | 80784 | 13665 | 85516 | 8060 | 4292 | 53.2506 | |
| mlin-fermikit | INDEL | D1_5 | * | het | 97.6071 | 97.5792 | 97.6350 | 51.6497 | 85454 | 2120 | 85333 | 2067 | 1958 | 94.7267 | |
| eyeh-varpipe | INDEL | D1_5 | * | het | 98.8729 | 98.5350 | 99.2132 | 51.9513 | 86291 | 1283 | 85238 | 676 | 474 | 70.1183 | |
| jpowers-varprowl | INDEL | D1_5 | * | het | 92.8158 | 97.3223 | 88.7081 | 61.6875 | 85229 | 2345 | 85221 | 10848 | 10534 | 97.1055 | |
| ckim-gatk | SNP | * | map_siren | het | 95.8468 | 93.5653 | 98.2423 | 71.0090 | 85136 | 5855 | 85122 | 1523 | 109 | 7.1569 | |
| jmaeng-gatk | SNP | * | map_siren | het | 95.7096 | 93.4477 | 98.0837 | 71.4678 | 85029 | 5962 | 85015 | 1661 | 101 | 6.0807 | |
| ckim-isaac | INDEL | D1_5 | * | het | 97.9869 | 97.6340 | 98.3423 | 46.0249 | 85502 | 2072 | 85013 | 1433 | 986 | 68.8067 | |
| anovak-vg | INDEL | I1_5 | * | * | 54.8287 | 54.8578 | 54.7996 | 53.4671 | 82651 | 68013 | 84844 | 69982 | 59671 | 85.2662 | |
| gduggal-bwaplat | SNP | ti | map_siren | * | 90.8656 | 83.6301 | 99.4716 | 68.7099 | 83927 | 16428 | 83958 | 446 | 118 | 26.4574 | |
| ciseli-custom | INDEL | D1_5 | * | het | 91.4315 | 94.8260 | 88.2716 | 63.1491 | 83041 | 4531 | 83497 | 11094 | 3726 | 33.5857 | |
| qzeng-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 91.5884 | 91.6329 | 91.5440 | 60.2311 | 59883 | 5468 | 83381 | 7702 | 4718 | 61.2568 | |
| qzeng-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 91.5884 | 91.6329 | 91.5440 | 60.2311 | 59883 | 5468 | 83381 | 7702 | 4718 | 61.2568 | |
| gduggal-bwafb | INDEL | I1_5 | * | het | 98.0966 | 97.2622 | 98.9454 | 56.5385 | 76877 | 2164 | 82849 | 883 | 649 | 73.4994 | |
| qzeng-custom | INDEL | I1_5 | * | het | 98.4046 | 98.3920 | 98.4173 | 59.0408 | 77770 | 1271 | 82639 | 1329 | 852 | 64.1084 | |
| anovak-vg | SNP | * | map_siren | het | 84.8820 | 91.5981 | 79.0836 | 63.1144 | 83346 | 7645 | 82394 | 21792 | 4974 | 22.8249 | |
| gduggal-snapfb | INDEL | I1_5 | * | het | 94.5346 | 97.1091 | 92.0931 | 57.7460 | 76756 | 2285 | 82322 | 7068 | 1603 | 22.6797 | |
| gduggal-snapvard | INDEL | I1_5 | * | het | 89.2130 | 96.8839 | 82.6678 | 61.9450 | 76578 | 2463 | 82223 | 17239 | 13345 | 77.4117 | |
| eyeh-varpipe | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 94.9804 | 93.5841 | 96.4190 | 67.2497 | 45174 | 3097 | 79672 | 2959 | 2749 | 92.9030 | |
| anovak-vg | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 72.8701 | 70.9790 | 74.8646 | 68.2103 | 67039 | 27410 | 79629 | 26735 | 20426 | 76.4017 | |
| dgrover-gatk | INDEL | I1_5 | * | het | 99.6919 | 99.6799 | 99.7038 | 61.0342 | 78788 | 253 | 78770 | 234 | 135 | 57.6923 | |
| ckim-gatk | INDEL | I1_5 | * | het | 99.5633 | 99.6774 | 99.4495 | 61.8943 | 78786 | 255 | 78766 | 436 | 147 | 33.7156 | |
| bgallagher-sentieon | INDEL | I1_5 | * | het | 99.6628 | 99.6660 | 99.6596 | 60.0640 | 78777 | 264 | 78760 | 269 | 153 | 56.8773 | |
| cchapple-custom | INDEL | * | HG002complexvar | * | 98.8567 | 98.4455 | 99.2713 | 55.5354 | 75742 | 1196 | 78742 | 578 | 462 | 79.9308 | |
| rpoplin-dv42 | INDEL | I1_5 | * | het | 99.3402 | 99.5015 | 99.1794 | 60.2585 | 78647 | 394 | 78679 | 651 | 605 | 92.9339 | |
| hfeng-pmm1 | INDEL | I1_5 | * | het | 99.6416 | 99.5559 | 99.7275 | 59.6258 | 78690 | 351 | 78673 | 215 | 113 | 52.5581 | |
| hfeng-pmm3 | INDEL | I1_5 | * | het | 99.7016 | 99.5433 | 99.8604 | 59.2337 | 78680 | 361 | 78661 | 110 | 51 | 46.3636 | |