PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
9351-9400 / 86044 show all | |||||||||||||||
| hfeng-pmm3 | INDEL | D16_PLUS | * | * | 97.6998 | 96.8013 | 98.6151 | 66.5273 | 6567 | 217 | 6551 | 92 | 69 | 75.0000 | |
| jmaeng-gatk | SNP | tv | map_l100_m2_e1 | homalt | 82.6342 | 70.4150 | 99.9847 | 69.7916 | 6550 | 2752 | 6550 | 1 | 1 | 100.0000 | |
| hfeng-pmm2 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 97.0941 | 94.7894 | 99.5137 | 51.5749 | 6549 | 360 | 6548 | 32 | 28 | 87.5000 | |
| hfeng-pmm2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 97.2945 | 95.0894 | 99.6044 | 78.8532 | 6545 | 338 | 6546 | 26 | 3 | 11.5385 | |
| raldana-dualsentieon | SNP | tv | map_l125_m0_e0 | * | 98.7925 | 98.7181 | 98.8671 | 74.3082 | 6546 | 85 | 6545 | 75 | 3 | 4.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 97.3545 | 94.8591 | 99.9847 | 25.8525 | 6532 | 354 | 6544 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 97.1200 | 95.0044 | 99.3320 | 25.8972 | 6542 | 344 | 6543 | 44 | 43 | 97.7273 | |
| egarrison-hhga | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 96.4351 | 94.7749 | 98.1545 | 42.9464 | 6548 | 361 | 6542 | 123 | 88 | 71.5447 | |
| anovak-vg | SNP | tv | map_l100_m0_e0 | het | 78.7491 | 90.6120 | 69.6328 | 77.9564 | 6544 | 678 | 6542 | 2853 | 767 | 26.8840 | |
| jpowers-varprowl | SNP | * | map_l125_m0_e0 | homalt | 98.5610 | 97.4523 | 99.6952 | 74.0600 | 6541 | 171 | 6541 | 20 | 11 | 55.0000 | |
| ckim-gatk | SNP | tv | map_l100_m2_e1 | homalt | 82.5549 | 70.3075 | 99.9694 | 70.5594 | 6540 | 2762 | 6540 | 2 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 97.6017 | 95.6643 | 99.6192 | 25.0742 | 6531 | 296 | 6540 | 25 | 24 | 96.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | * | * | 97.4049 | 96.6244 | 98.1982 | 67.4168 | 6555 | 229 | 6540 | 120 | 70 | 58.3333 | |
| raldana-dualsentieon | INDEL | D16_PLUS | * | * | 97.3178 | 96.6244 | 98.0213 | 67.0307 | 6555 | 229 | 6539 | 132 | 101 | 76.5152 | |
| ckim-dragen | SNP | tv | map_l125_m0_e0 | * | 97.9625 | 98.6126 | 97.3210 | 77.9914 | 6539 | 92 | 6539 | 180 | 17 | 9.4444 | |
| ckim-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 96.8875 | 94.6157 | 99.2711 | 52.0847 | 6537 | 372 | 6537 | 48 | 43 | 89.5833 | |
| ckim-dragen | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 96.8899 | 94.7026 | 99.1807 | 52.6407 | 6543 | 366 | 6537 | 54 | 52 | 96.2963 | |
| asubramanian-gatk | INDEL | D16_PLUS | * | * | 96.9778 | 96.5949 | 97.3637 | 71.3383 | 6553 | 231 | 6537 | 177 | 130 | 73.4463 | |
| ghariani-varprowl | SNP | * | map_l125_m0_e0 | homalt | 98.5153 | 97.3778 | 99.6797 | 71.5507 | 6536 | 176 | 6536 | 21 | 10 | 47.6190 | |
| egarrison-hhga | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 98.4855 | 98.1673 | 98.8057 | 79.9095 | 6535 | 122 | 6536 | 79 | 33 | 41.7722 | |
| egarrison-hhga | SNP | tv | map_l125_m0_e0 | * | 99.1050 | 98.5221 | 99.6948 | 73.4104 | 6533 | 98 | 6533 | 20 | 9 | 45.0000 | |
| ckim-vqsr | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 96.8560 | 94.5289 | 99.3006 | 52.1150 | 6531 | 378 | 6531 | 46 | 41 | 89.1304 | |
| jlack-gatk | INDEL | D16_PLUS | * | * | 96.2606 | 96.5065 | 96.0159 | 70.3319 | 6547 | 237 | 6531 | 271 | 163 | 60.1476 | |
| bgallagher-sentieon | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 97.5221 | 95.5960 | 99.5274 | 32.5866 | 6512 | 300 | 6529 | 31 | 31 | 100.0000 | |
| astatham-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 97.5098 | 95.4885 | 99.6185 | 24.8854 | 6519 | 308 | 6528 | 25 | 24 | 96.0000 | |
| qzeng-custom | INDEL | D16_PLUS | * | * | 79.4045 | 91.9517 | 69.8705 | 62.5471 | 6238 | 546 | 6528 | 2815 | 413 | 14.6714 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 63.5479 | 97.2152 | 47.2013 | 46.3823 | 6493 | 186 | 6527 | 7301 | 7199 | 98.6029 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 97.4991 | 95.5520 | 99.5272 | 33.1055 | 6509 | 303 | 6526 | 31 | 31 | 100.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 96.9107 | 94.4420 | 99.5119 | 50.8251 | 6525 | 384 | 6524 | 32 | 25 | 78.1250 | |
| jli-custom | SNP | tv | map_l125_m0_e0 | * | 98.7959 | 98.3713 | 99.2242 | 70.3527 | 6523 | 108 | 6523 | 51 | 18 | 35.2941 | |
| ndellapenna-hhga | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 98.2968 | 97.9570 | 98.6388 | 79.3252 | 6521 | 136 | 6522 | 90 | 41 | 45.5556 | |
| rpoplin-dv42 | SNP | tv | map_l125_m0_e0 | * | 98.4900 | 98.3713 | 98.6090 | 73.3113 | 6523 | 108 | 6522 | 92 | 52 | 56.5217 | |
| gduggal-bwaplat | SNP | tv | map_l125_m1_e0 | het | 78.1031 | 64.4085 | 99.1939 | 89.8771 | 6522 | 3604 | 6522 | 53 | 13 | 24.5283 | |
| ciseli-custom | SNP | ti | map_l150_m2_e0 | homalt | 87.0824 | 85.6618 | 88.5509 | 72.6120 | 6524 | 1092 | 6520 | 843 | 689 | 81.7319 | |
| ckim-dragen | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 96.8949 | 94.4670 | 99.4508 | 25.3587 | 6505 | 381 | 6519 | 36 | 36 | 100.0000 | |
| qzeng-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 77.8582 | 76.3275 | 79.4516 | 54.8804 | 4643 | 1440 | 6519 | 1686 | 1004 | 59.5492 | |
| ciseli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 47.4490 | 43.8282 | 51.7219 | 54.7342 | 6480 | 8305 | 6518 | 6084 | 5189 | 85.2893 | |
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 97.2807 | 95.0784 | 99.5875 | 32.3304 | 6491 | 336 | 6518 | 27 | 27 | 100.0000 | |
| gduggal-bwafb | SNP | tv | map_l125_m0_e0 | * | 98.0737 | 98.2808 | 97.8675 | 77.6619 | 6517 | 114 | 6517 | 142 | 29 | 20.4225 | |
| gduggal-snapplat | SNP | * | map_l250_m2_e0 | * | 87.8865 | 82.6252 | 93.8634 | 93.9104 | 6515 | 1370 | 6516 | 426 | 206 | 48.3568 | |
| jlack-gatk | SNP | tv | map_l125_m0_e0 | * | 93.0649 | 98.2657 | 88.3869 | 84.2156 | 6516 | 115 | 6515 | 856 | 54 | 6.3084 | |
| raldana-dualsentieon | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 97.1241 | 94.4089 | 100.0000 | 25.3923 | 6501 | 385 | 6514 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 97.6332 | 95.3758 | 100.0000 | 31.9545 | 6497 | 315 | 6514 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 96.8780 | 94.3944 | 99.4959 | 25.6896 | 6500 | 386 | 6513 | 33 | 33 | 100.0000 | |
| ckim-dragen | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 97.3919 | 95.3611 | 99.5111 | 32.7822 | 6496 | 316 | 6513 | 32 | 32 | 100.0000 | |
| asubramanian-gatk | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 97.0207 | 95.3171 | 98.7864 | 34.4210 | 6493 | 319 | 6512 | 80 | 77 | 96.2500 | |
| egarrison-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 76.3332 | 62.1432 | 98.9213 | 34.8317 | 6901 | 4204 | 6511 | 71 | 64 | 90.1408 | |
| ckim-isaac | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | het | 97.5990 | 96.0558 | 99.1926 | 35.3810 | 6478 | 266 | 6511 | 53 | 6 | 11.3208 | |
| hfeng-pmm3 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 96.8615 | 94.2539 | 99.6175 | 50.6158 | 6512 | 397 | 6511 | 25 | 20 | 80.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 97.5390 | 95.2102 | 99.9846 | 25.1466 | 6500 | 327 | 6509 | 1 | 0 | 0.0000 | |