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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TP Query FPFP gt% FP ma
9101-9150 / 86044 show all
ckim-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
96.8156
94.2210
99.5572
26.7488
670141167453030
100.0000
hfeng-pmm2SNP*lowcmp_SimpleRepeat_quadTR_11to50homalt
99.9852
100.0000
99.9704
37.6087
67450674522
100.0000
ckim-vqsrINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
96.8082
94.2070
99.5571
26.7517
670041267443030
100.0000
astatham-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
98.8422
97.9805
99.7191
81.0931
674413967441910
52.6316
raldana-dualsentieonSNP*lowcmp_SimpleRepeat_quadTR_11to50homalt
99.9852
99.9852
99.9852
34.3808
67441674411
100.0000
hfeng-pmm1SNP*lowcmp_SimpleRepeat_quadTR_11to50homalt
99.9703
99.9703
99.9703
36.7854
67432674322
100.0000
gduggal-snapvardSNPtvmap_l150_m1_e0het
88.3469
97.2934
80.9072
84.0922
67581886742159194
5.9082
dgrover-gatkSNP*lowcmp_SimpleRepeat_quadTR_11to50homalt
99.9629
99.9555
99.9703
35.4085
67423674222
100.0000
bgallagher-sentieonSNP*lowcmp_SimpleRepeat_quadTR_11to50homalt
99.9629
99.9555
99.9703
35.1476
67423674222
100.0000
jpowers-varprowlSNP*lowcmp_SimpleRepeat_quadTR_11to50homalt
98.3156
99.8517
96.8261
47.4887
6735106742221131
59.2760
rpoplin-dv42SNP*lowcmp_SimpleRepeat_quadTR_11to50homalt
99.8741
99.9407
99.8075
37.7626
674146741135
38.4615
jli-customSNPtilowcmp_SimpleRepeat_quadTR_11to50het
99.3587
99.9407
98.7835
42.3002
674046740831
1.2048
ckim-dragenSNP*lowcmp_SimpleRepeat_quadTR_11to50homalt
99.9481
99.9259
99.9703
34.6642
67405674022
100.0000
hfeng-pmm3SNP*lowcmp_SimpleRepeat_quadTR_11to50homalt
99.9407
99.9259
99.9555
36.4048
67405674033
100.0000
jlack-gatkSNP*lowcmp_SimpleRepeat_quadTR_11to50homalt
99.9333
99.9259
99.9407
34.6955
67405674043
75.0000
ghariani-varprowlSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
83.8511
96.7311
73.9980
86.2278
66582256739236815
0.6334
jli-customSNP*lowcmp_SimpleRepeat_quadTR_11to50homalt
99.9407
99.9110
99.9703
35.3939
67396673922
100.0000
ghariani-varprowlSNP*lowcmp_SimpleRepeat_quadTR_11to50homalt
98.4008
99.8073
97.0334
44.7618
6732136738206131
63.5922
gduggal-snapplatSNPtvmap_l150_m2_e1het
92.0469
91.6576
92.4396
88.3528
67356136737551289
52.4501
ltrigg-rtg1SNPtvmap_l150_m1_e0het
98.3075
97.0055
99.6450
62.4882
67382086736244
16.6667
hfeng-pmm1INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
96.9434
94.0945
99.9703
27.5328
6692420673621
50.0000
gduggal-snapvardINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
69.0793
87.2712
57.1635
56.5737
2146313673550474364
86.4672
astatham-gatkSNP*lowcmp_SimpleRepeat_quadTR_11to50homalt
99.9258
99.8517
100.0000
35.0718
673510673500
bgallagher-sentieonSNPtilowcmp_SimpleRepeat_quadTR_11to50het
99.1461
99.8517
98.4503
43.0996
67341067341061
0.9434
dgrover-gatkSNPtilowcmp_SimpleRepeat_quadTR_11to50het
99.3508
99.8517
98.8550
44.7482
6734106734781
1.2821
egarrison-hhgaSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
98.2341
97.7771
98.6954
80.9079
673015367338929
32.5843
rpoplin-dv42SNPtilowcmp_SimpleRepeat_quadTR_11to50het
99.8665
99.8517
99.8813
39.6598
673410673282
25.0000
ckim-dragenINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
96.2933
93.2116
99.5857
27.6338
668748767312828
100.0000
asubramanian-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
95.8385
93.1558
98.6804
28.6536
668349167309087
96.6667
gduggal-snapfbSNPtilowcmp_SimpleRepeat_quadTR_11to50het
85.9520
98.7396
76.0968
60.6268
6659856730211490
4.2573
gduggal-bwafbINDEL**hetalt
87.6150
80.5643
96.0183
78.7583
2033249056728279275
98.5663
gduggal-bwaplatINDEL*lowcmp_SimpleRepeat_quadTR_11to50het
74.5401
60.5690
96.8890
74.8497
67284380672721642
19.4444
jlack-gatkSNPtilowcmp_SimpleRepeat_quadTR_11to50het
98.5569
99.7479
97.3939
48.1612
67271767271803
1.6667
qzeng-customSNPtilowcmp_SimpleRepeat_quadTR_11to50het
98.8309
99.3772
98.2905
53.9062
67024267271176
5.1282
ckim-gatkSNPtilowcmp_SimpleRepeat_quadTR_11to50het
99.2183
99.7479
98.6942
45.7109
6727176727892
2.2472
cchapple-customINDELD16_PLUS**
96.3496
95.5041
97.2102
62.8743
64793056725193158
81.8653
cchapple-customSNP*lowcmp_SimpleRepeat_quadTR_11to50homalt
99.9481
99.9110
99.9851
30.4766
67396672411
100.0000
ltrigg-rtg1INDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
97.8494
96.0631
99.7034
51.2998
663727267242010
50.0000
gduggal-snapplatSNPtimap_l150_m2_e1homalt
93.2871
87.5211
99.8663
73.9142
6733960672499
100.0000
jmaeng-gatkSNP*lowcmp_SimpleRepeat_quadTR_11to50homalt
99.8292
99.6738
99.9851
35.1779
672322672311
100.0000
jmaeng-gatkSNPtilowcmp_SimpleRepeat_quadTR_11to50het
99.4232
99.6886
99.1593
46.1734
6723216723571
1.7544
ckim-gatkSNP*lowcmp_SimpleRepeat_quadTR_11to50homalt
99.8292
99.6590
100.0000
35.1158
672223672200
jpowers-varprowlSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
95.6086
96.6584
94.5813
87.2366
6653230672038517
4.4156
mlin-fermikitSNP*lowcmp_SimpleRepeat_quadTR_11to50homalt
98.3026
99.5107
97.1234
41.8851
6712336719199180
90.4523
dgrover-gatkINDEL*lowcmp_SimpleRepeat_triTR_11to50*
99.7994
99.7475
99.8514
49.4629
6716176718106
60.0000
hfeng-pmm2INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
96.8169
93.8695
99.9554
27.7467
6676436671832
66.6667
ghariani-varprowlSNPtilowcmp_SimpleRepeat_quadTR_11to50het
95.6807
99.1251
92.4676
62.1593
66855967155478
1.4625
ltrigg-rtg1SNP*lowcmp_SimpleRepeat_quadTR_11to50homalt
99.8441
99.8073
99.8810
33.7603
673213671481
12.5000
bgallagher-sentieonINDEL*lowcmp_SimpleRepeat_triTR_11to50*
99.7548
99.6881
99.8216
48.8361
6712216714128
66.6667
astatham-gatkINDEL*lowcmp_SimpleRepeat_triTR_11to50*
99.7622
99.6881
99.8364
49.1224
6712216714116
54.5455