PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
8851-8900 / 86044 show all | |||||||||||||||
| gduggal-bwavard | SNP | tv | map_l150_m2_e0 | het | 91.7382 | 98.3591 | 85.9524 | 85.7991 | 7133 | 119 | 7116 | 1163 | 44 | 3.7833 | |
| jli-custom | SNP | tv | map_l100_m0_e0 | het | 98.7783 | 98.5184 | 99.0395 | 66.6140 | 7115 | 107 | 7115 | 69 | 20 | 28.9855 | |
| egarrison-hhga | SNP | tv | map_l100_m0_e0 | het | 99.0740 | 98.5184 | 99.6359 | 68.9508 | 7115 | 107 | 7115 | 26 | 10 | 38.4615 | |
| gduggal-bwavard | SNP | tv | HG002compoundhet | * | 81.1305 | 78.3481 | 84.1178 | 52.1015 | 6991 | 1932 | 7113 | 1343 | 1177 | 87.6396 | |
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.4520 | 98.9651 | 99.9438 | 27.8836 | 7172 | 75 | 7111 | 4 | 4 | 100.0000 | |
| dgrover-gatk | SNP | * | map_l250_m1_e0 | * | 98.3434 | 98.2276 | 98.4594 | 89.8378 | 7094 | 128 | 7094 | 111 | 29 | 26.1261 | |
| gduggal-bwavard | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 98.2001 | 97.4711 | 98.9400 | 41.0943 | 7169 | 186 | 7094 | 76 | 20 | 26.3158 | |
| ltrigg-rtg2 | SNP | tv | map_l150_m2_e1 | het | 98.0696 | 96.4480 | 99.7466 | 60.6896 | 7087 | 261 | 7085 | 18 | 1 | 5.5556 | |
| raldana-dualsentieon | SNP | * | map_l250_m1_e0 | * | 98.0609 | 98.0338 | 98.0881 | 87.5648 | 7080 | 142 | 7080 | 138 | 6 | 4.3478 | |
| asubramanian-gatk | SNP | tv | map_l100_m2_e1 | het | 61.4944 | 44.4347 | 99.8167 | 88.7261 | 7082 | 8856 | 7080 | 13 | 2 | 15.3846 | |
| ndellapenna-hhga | SNP | tv | map_l150_m2_e0 | het | 98.5727 | 97.6145 | 99.5500 | 73.8403 | 7079 | 173 | 7079 | 32 | 13 | 40.6250 | |
| gduggal-bwavard | SNP | tv | map_l100_m0_e0 | het | 91.6040 | 98.1446 | 85.8808 | 81.9878 | 7088 | 134 | 7074 | 1163 | 45 | 3.8693 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 94.5664 | 97.8336 | 91.5103 | 35.6834 | 7090 | 157 | 7071 | 656 | 646 | 98.4756 | |
| hfeng-pmm2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 97.6745 | 96.2080 | 99.1864 | 53.3595 | 7104 | 280 | 7071 | 58 | 53 | 91.3793 | |
| gduggal-snapfb | SNP | tv | map_l150_m2_e0 | het | 95.8184 | 97.4766 | 94.2156 | 77.2326 | 7069 | 183 | 7069 | 434 | 174 | 40.0922 | |
| gduggal-snapvard | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 96.3550 | 97.1312 | 95.5910 | 44.3893 | 7144 | 211 | 7068 | 326 | 14 | 4.2945 | |
| rpoplin-dv42 | SNP | * | map_l250_m1_e0 | * | 98.2210 | 97.8538 | 98.5910 | 87.3689 | 7067 | 155 | 7067 | 101 | 66 | 65.3465 | |
| eyeh-varpipe | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | * | 96.7237 | 99.6377 | 93.9753 | 40.8977 | 7425 | 27 | 7066 | 453 | 22 | 4.8565 | |
| cchapple-custom | SNP | tv | map_l150_m2_e0 | het | 95.1992 | 97.1870 | 93.2911 | 82.3459 | 7048 | 204 | 7064 | 508 | 83 | 16.3386 | |
| anovak-vg | SNP | tv | HG002compoundhet | * | 74.6577 | 75.2101 | 74.1133 | 50.0629 | 6711 | 2212 | 7063 | 2467 | 1646 | 66.7207 | |
| ndellapenna-hhga | SNP | tv | map_l100_m0_e0 | het | 98.6590 | 97.7984 | 99.5349 | 67.9349 | 7063 | 159 | 7063 | 33 | 13 | 39.3939 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 85.2828 | 75.9897 | 97.1657 | 76.5450 | 7064 | 2232 | 7062 | 206 | 204 | 99.0291 | |
| cchapple-custom | SNP | ti | map_l150_m1_e0 | homalt | 98.1515 | 96.3832 | 99.9858 | 66.0349 | 7062 | 265 | 7060 | 1 | 1 | 100.0000 | |
| jlack-gatk | SNP | * | map_l250_m1_e0 | * | 93.2444 | 97.7569 | 89.1302 | 92.5027 | 7060 | 162 | 7060 | 861 | 66 | 7.6655 | |
| gduggal-bwavard | SNP | ti | map_l150_m1_e0 | homalt | 98.6247 | 97.4478 | 99.8303 | 71.2444 | 7140 | 187 | 7059 | 12 | 9 | 75.0000 | |
| egarrison-hhga | SNP | * | map_l250_m1_e0 | * | 98.6376 | 97.7430 | 99.5487 | 87.7148 | 7059 | 163 | 7059 | 32 | 15 | 46.8750 | |
| jpowers-varprowl | SNP | tv | map_l150_m2_e1 | het | 95.8056 | 96.0533 | 95.5592 | 83.3978 | 7058 | 290 | 7058 | 328 | 76 | 23.1707 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.0810 | 98.2062 | 99.9717 | 26.1765 | 7117 | 130 | 7057 | 2 | 2 | 100.0000 | |
| qzeng-custom | SNP | tv | map_l100_m1_e0 | homalt | 87.4842 | 78.2705 | 99.1566 | 59.7237 | 7078 | 1965 | 7054 | 60 | 60 | 100.0000 | |
| cchapple-custom | SNP | tv | map_l100_m0_e0 | het | 95.4613 | 97.4522 | 93.5501 | 77.1681 | 7038 | 184 | 7049 | 486 | 83 | 17.0782 | |
| ckim-dragen | SNP | * | map_l250_m1_e0 | * | 97.2004 | 97.5768 | 96.8269 | 89.0554 | 7047 | 175 | 7049 | 231 | 29 | 12.5541 | |
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 97.5934 | 95.8965 | 99.3515 | 52.0127 | 7081 | 303 | 7047 | 46 | 40 | 86.9565 | |
| raldana-dualsentieon | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 97.1088 | 95.8830 | 98.3664 | 54.5270 | 7080 | 304 | 7045 | 117 | 113 | 96.5812 | |
| hfeng-pmm1 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 97.5249 | 95.8559 | 99.2531 | 52.1381 | 7078 | 306 | 7043 | 53 | 40 | 75.4717 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 96.6527 | 94.4759 | 98.9323 | 48.2177 | 6345 | 371 | 7042 | 76 | 21 | 27.6316 | |
| ckim-isaac | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | * | 96.4572 | 94.0150 | 99.0295 | 31.3640 | 7006 | 446 | 7041 | 69 | 48 | 69.5652 | |
| ltrigg-rtg1 | SNP | tv | map_l150_m2_e0 | het | 98.3588 | 97.1042 | 99.6461 | 64.9467 | 7042 | 210 | 7040 | 25 | 4 | 16.0000 | |
| gduggal-snapfb | SNP | tv | map_l100_m0_e0 | het | 95.8604 | 97.4661 | 94.3068 | 70.6611 | 7039 | 183 | 7040 | 425 | 163 | 38.3529 | |
| gduggal-snapvard | SNP | tv | map_l150_m2_e0 | het | 88.6343 | 97.2835 | 81.3975 | 85.0700 | 7055 | 197 | 7036 | 1608 | 95 | 5.9080 | |
| anovak-vg | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 97.2249 | 97.8914 | 96.5673 | 61.2235 | 6871 | 148 | 7033 | 250 | 97 | 38.8000 | |
| qzeng-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 97.2050 | 96.8677 | 97.5447 | 33.7225 | 7020 | 227 | 7032 | 177 | 164 | 92.6554 | |
| ghariani-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 42.9887 | 39.8223 | 46.7021 | 60.4305 | 7037 | 10634 | 7031 | 8024 | 7936 | 98.9033 | |
| ghariani-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 42.9887 | 39.8223 | 46.7021 | 60.4305 | 7037 | 10634 | 7031 | 8024 | 7936 | 98.9033 | |
| gduggal-bwafb | SNP | * | map_l250_m1_e0 | * | 97.6861 | 97.3276 | 98.0471 | 89.3479 | 7029 | 193 | 7029 | 140 | 38 | 27.1429 | |
| ghariani-varprowl | SNP | * | map_l250_m1_e0 | * | 95.4295 | 97.2861 | 93.6425 | 90.9971 | 7026 | 196 | 7026 | 477 | 84 | 17.6101 | |
| mlin-fermikit | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 72.4419 | 70.6939 | 74.2785 | 64.5876 | 7121 | 2952 | 7026 | 2433 | 2324 | 95.5199 | |
| jli-custom | SNP | * | map_l250_m1_e0 | * | 98.1678 | 97.1891 | 99.1664 | 85.6613 | 7019 | 203 | 7019 | 59 | 29 | 49.1525 | |
| ltrigg-rtg1 | SNP | tv | map_l100_m0_e0 | het | 98.3382 | 97.0922 | 99.6165 | 55.2134 | 7012 | 210 | 7013 | 27 | 4 | 14.8148 | |
| ckim-dragen | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.8860 | 99.9003 | 99.8718 | 61.7413 | 7012 | 7 | 7013 | 9 | 1 | 11.1111 | |
| cchapple-custom | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.8504 | 99.8290 | 99.8718 | 59.4899 | 7007 | 12 | 7011 | 9 | 6 | 66.6667 | |