PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
70001-70050 / 86044 show all | |||||||||||||||
| cchapple-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 0.0000 | 87.2192 | 0.0000 | 0.0000 | 1126 | 165 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| cchapple-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 0.0000 | 94.2063 | 0.0000 | 0.0000 | 7626 | 469 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 0.0000 | 95.4885 | 0.0000 | 0.0000 | 6519 | 308 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 0.0000 | 94.1392 | 0.0000 | 0.0000 | 7694 | 479 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 0.0000 | 94.1987 | 0.0000 | 0.0000 | 8752 | 539 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 95.4545 | 0.0000 | 0.0000 | 6573 | 313 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 68.2281 | 0.0000 | 0.0000 | 335 | 156 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 0.0000 | 95.6204 | 0.0000 | 0.0000 | 393 | 18 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 100.0000 | 100.0000 | 1 | 0 | 0 | 0 | 0 | ||||
| cchapple-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| cchapple-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| cchapple-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 97.6557 | 0.0000 | 0.0000 | 1458 | 35 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 93.8462 | 0.0000 | 0.0000 | 610 | 40 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 98.7013 | 0.0000 | 0.0000 | 456 | 6 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 89.7959 | 0.0000 | 0.0000 | 44 | 5 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D1_5 | map_l100_m0_e0 | hetalt | 0.0000 | 92.8571 | 0.0000 | 0.0000 | 13 | 1 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D1_5 | map_l100_m1_e0 | hetalt | 0.0000 | 87.2340 | 0.0000 | 0.0000 | 41 | 6 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D1_5 | map_l100_m2_e0 | hetalt | 0.0000 | 87.5000 | 0.0000 | 0.0000 | 42 | 6 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D1_5 | map_l100_m2_e1 | hetalt | 0.0000 | 88.2353 | 0.0000 | 0.0000 | 45 | 6 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D1_5 | map_l125_m0_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 3 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D1_5 | map_l125_m1_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 13 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D1_5 | map_l125_m2_e0 | hetalt | 0.0000 | 93.3333 | 0.0000 | 0.0000 | 14 | 1 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D1_5 | map_l125_m2_e1 | hetalt | 0.0000 | 93.3333 | 0.0000 | 0.0000 | 14 | 1 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D1_5 | map_l150_m0_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 2 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D1_5 | map_l150_m1_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 7 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D1_5 | map_l150_m2_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 7 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D1_5 | map_l150_m2_e1 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 8 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D1_5 | map_l250_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | INDEL | D1_5 | map_l250_m1_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 3 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D1_5 | map_l250_m2_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 3 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D1_5 | map_l250_m2_e1 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 3 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D1_5 | map_siren | hetalt | 0.0000 | 86.9048 | 0.0000 | 0.0000 | 73 | 11 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D1_5 | segdup | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 52 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D1_5 | segdupwithalt | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | INDEL | D1_5 | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| cchapple-custom | INDEL | D1_5 | tech_badpromoters | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 2 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D6_15 | * | hetalt | 0.0000 | 93.7852 | 0.0000 | 0.0000 | 7666 | 508 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D6_15 | HG002complexvar | hetalt | 0.0000 | 87.4630 | 0.0000 | 0.0000 | 886 | 127 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D6_15 | HG002compoundhet | hetalt | 0.0000 | 93.8412 | 0.0000 | 0.0000 | 7649 | 502 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D6_15 | decoy | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D6_15 | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| cchapple-custom | INDEL | D6_15 | func_cds | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 2 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 87.1090 | 0.0000 | 0.0000 | 2061 | 305 | 0 | 0 | 0 | ||