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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TP Query FPFP gt% FP ma
6701-6750 / 86044 show all
rpoplin-dv42SNP*HG002compoundhethomalt
99.7682
99.8331
99.7035
35.1268
1076418107593229
90.6250
gduggal-bwafbSNPtvmap_l150_m1_e0*
98.4669
98.5887
98.3454
76.8340
107581541075818138
20.9945
cchapple-customSNPtvmap_l100_m0_e0*
96.3944
97.1220
95.6777
73.2738
107653191075848683
17.0782
gduggal-snapfbSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
62.0729
98.0650
45.4073
82.4158
105922091075712933236
1.8248
hfeng-pmm1INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
98.1747
97.0673
99.3076
46.3948
10757325107577572
96.0000
qzeng-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
97.7826
98.8983
96.6918
85.1220
106821191075636869
18.7500
qzeng-customINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_merged*
79.5976
80.1449
79.0576
60.6684
807320001075528491405
49.3155
rpoplin-dv42SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
99.6387
99.6019
99.6756
81.2035
1075843107543519
54.2857
jli-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
99.4405
99.5463
99.3348
79.5031
1075249107527213
18.0556
bgallagher-sentieonSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
99.5462
99.5186
99.5739
79.3195
1074952107494613
28.2609
mlin-fermikitINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
80.9211
77.9906
84.0804
49.2093
1075130341074820352023
99.4103
cchapple-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
99.1305
99.0001
99.2612
79.9407
10693108107488026
32.5000
ltrigg-rtg1SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
98.7849
99.1019
98.4699
79.4919
1070497107471672
1.1976
dgrover-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
99.5323
99.5000
99.5646
79.8322
1074754107474715
31.9149
eyeh-varpipeSNPtimap_l125_m1_e0homalt
99.8628
99.8280
99.8977
68.2342
110261910743116
54.5455
ckim-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
99.5044
99.4538
99.5551
80.0137
1074259107424817
35.4167
rpoplin-dv42INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
97.2389
96.9229
97.5570
48.8051
1074134110742269266
98.8848
ghariani-varprowlSNPtvmap_l150_m1_e0*
96.9968
98.4146
95.6193
80.2097
107391731073949289
18.0894
jli-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
97.7497
95.9658
99.6012
27.0945
10657448107394342
97.6744
hfeng-pmm1SNP*segduphomalt
99.9256
99.9535
99.8977
88.8973
107385107381111
100.0000
hfeng-pmm3SNP*segduphomalt
99.9395
99.9535
99.9256
88.8624
1073851073888
100.0000
jpowers-varprowlSNP*segduphomalt
99.4812
99.9441
99.0225
89.9716
1073761073810665
61.3208
hfeng-pmm2SNP*segduphomalt
99.9116
99.9441
99.8791
88.8962
107376107371313
100.0000
ckim-isaacSNP*lowcmp_SimpleRepeat_homopolymer_6to10het
98.2106
96.5536
99.9255
53.9316
107023821073783
37.5000
gduggal-bwafbSNP*HG002compoundhethomalt
99.2787
99.5826
98.9767
38.6655
10737451073611191
81.9820
ghariani-varprowlSNP*segduphomalt
99.4257
99.9069
98.9491
89.5722
10733101073411465
57.0175
egarrison-hhgaSNP*segduphomalt
99.7815
99.8976
99.6657
89.1087
1073211107323636
100.0000
jli-customSNP*segduphomalt
99.9023
99.8976
99.9069
88.0536
1073211107321010
100.0000
ckim-dragenSNPtilowcmp_SimpleRepeat_quadTR_11to50*
99.7675
99.8416
99.6935
39.2563
107151710732334
12.1212
cchapple-customSNPtilowcmp_SimpleRepeat_quadTR_11to50*
99.6239
99.8416
99.4072
41.3357
107151710732647
10.9375
mlin-fermikitSNPtvlowcmp_SimpleRepeat_homopolymer_6to10*
98.7576
98.3503
99.1683
60.5203
10731180107319083
92.2222
ltrigg-rtg2SNP*segduphomalt
99.7490
99.9628
99.5362
88.2598
107394107315050
100.0000
ndellapenna-hhgaSNP*segduphomalt
99.7258
99.8883
99.5639
88.9154
1073112107314747
100.0000
jlack-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
99.1500
99.3519
98.9488
79.8585
10731701073111427
23.6842
rpoplin-dv42SNP*segduphomalt
99.8140
99.8883
99.7398
89.1939
1073112107312828
100.0000
raldana-dualsentieonSNP*segduphomalt
99.9022
99.8883
99.9162
87.9114
10731121073199
100.0000
ckim-dragenSNP*segduphomalt
99.9022
99.8790
99.9255
87.7402
10730131073088
100.0000
jmaeng-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
99.5131
99.3427
99.6841
80.0486
1073071107303412
35.2941
ltrigg-rtg1SNPtilowcmp_SimpleRepeat_quadTR_11to50*
99.3788
99.6180
99.1407
38.1189
106914110730931
1.0753
ckim-vqsrSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
99.4808
99.3427
99.6193
80.0419
1073071107304117
41.4634
dgrover-gatkSNP*segduphomalt
99.8976
99.8790
99.9162
88.2042
10730131073099
100.0000
ltrigg-rtg1SNP*segduphomalt
99.7351
99.9348
99.5361
88.6997
107367107295050
100.0000
bgallagher-sentieonSNP*segduphomalt
99.8883
99.8697
99.9069
88.1168
1072914107291010
100.0000
jli-customSNPtilowcmp_SimpleRepeat_quadTR_11to50*
99.5868
99.9441
99.2321
39.7088
10726610726831
1.2048
jlack-gatkSNP*segduphomalt
99.8743
99.8418
99.9069
88.3916
1072617107261010
100.0000
astatham-gatkSNP*segduphomalt
99.8696
99.8324
99.9068
88.1147
1072518107251010
100.0000
anovak-vgINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331*
53.3229
48.2739
59.5513
59.8591
776183161072472845656
77.6496
anovak-vgINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
53.3229
48.2739
59.5513
59.8591
776183161072472845656
77.6496
eyeh-varpipeSNPtvlowcmp_SimpleRepeat_homopolymer_6to10*
99.7641
99.8350
99.6932
57.1024
1089318107243314
42.4242
egarrison-hhgaSNP*HG002compoundhethomalt
99.2639
99.4064
99.1218
35.3785
1071864107229582
86.3158