PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
5801-5850 / 86044 show all | |||||||||||||||
| jlack-gatk | SNP | * | map_l125_m0_e0 | het | 92.5432 | 98.6576 | 87.1425 | 85.9677 | 12494 | 170 | 12491 | 1843 | 134 | 7.2708 | |
| rpoplin-dv42 | SNP | * | map_l125_m0_e0 | het | 98.6495 | 98.6418 | 98.6571 | 74.4583 | 12492 | 172 | 12489 | 170 | 97 | 57.0588 | |
| ghariani-varprowl | SNP | * | map_l125_m0_e0 | het | 96.3272 | 98.5786 | 94.1762 | 82.3918 | 12484 | 180 | 12484 | 772 | 162 | 20.9845 | |
| mlin-fermikit | SNP | * | map_l125_m1_e0 | het | 60.7541 | 43.9737 | 98.2445 | 60.8741 | 12485 | 15907 | 12480 | 223 | 8 | 3.5874 | |
| cchapple-custom | SNP | ti | map_l150_m2_e0 | het | 96.0807 | 96.8481 | 95.3254 | 81.6490 | 12475 | 406 | 12480 | 612 | 162 | 26.4706 | |
| gduggal-snapvard | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 74.0214 | 58.9765 | 99.3707 | 59.0788 | 2086 | 1451 | 12474 | 79 | 71 | 89.8734 | |
| jpowers-varprowl | SNP | ti | map_l150_m2_e1 | het | 96.4360 | 95.8433 | 97.0362 | 82.0973 | 12474 | 541 | 12474 | 381 | 131 | 34.3832 | |
| ckim-dragen | SNP | * | map_l125_m0_e0 | het | 97.3570 | 98.4523 | 96.2857 | 80.0772 | 12468 | 196 | 12469 | 481 | 37 | 7.6923 | |
| gduggal-snapvard | SNP | ti | map_l150_m2_e1 | het | 90.0889 | 96.5271 | 84.4559 | 85.0397 | 12563 | 452 | 12464 | 2294 | 173 | 7.5414 | |
| raldana-dualsentieon | SNP | * | map_l125_m0_e0 | het | 98.3431 | 98.4365 | 98.2499 | 76.1833 | 12466 | 198 | 12463 | 222 | 2 | 0.9009 | |
| gduggal-snapfb | SNP | ti | map_l150_m2_e0 | het | 95.8374 | 96.6850 | 95.0046 | 76.3778 | 12454 | 427 | 12457 | 655 | 335 | 51.1450 | |
| ltrigg-rtg2 | SNP | ti | map_l150_m2_e0 | het | 98.2167 | 96.6307 | 99.8556 | 61.9797 | 12447 | 434 | 12450 | 18 | 1 | 5.5556 | |
| cchapple-custom | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 93.6951 | 91.3730 | 96.1384 | 58.0455 | 9204 | 869 | 12448 | 500 | 431 | 86.2000 | |
| ckim-isaac | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 92.5242 | 92.9345 | 92.1175 | 55.9701 | 12785 | 972 | 12446 | 1065 | 828 | 77.7465 | |
| ckim-isaac | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 92.5242 | 92.9345 | 92.1175 | 55.9701 | 12785 | 972 | 12446 | 1065 | 828 | 77.7465 | |
| ltrigg-rtg1 | SNP | ti | map_l125_m0_e0 | * | 98.6208 | 97.4926 | 99.7755 | 64.1831 | 12442 | 320 | 12442 | 28 | 12 | 42.8571 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 80.3731 | 72.7114 | 89.8397 | 50.0523 | 11668 | 4379 | 12441 | 1407 | 1388 | 98.6496 | |
| gduggal-bwafb | SNP | * | map_l125_m0_e0 | het | 98.0108 | 98.2391 | 97.7835 | 78.4484 | 12441 | 223 | 12441 | 282 | 70 | 24.8227 | |
| qzeng-custom | SNP | tv | map_l100_m1_e0 | het | 88.3933 | 80.7745 | 97.5991 | 81.8251 | 12453 | 2964 | 12439 | 306 | 244 | 79.7386 | |
| egarrison-hhga | SNP | * | map_l125_m0_e0 | het | 98.9341 | 98.2154 | 99.6635 | 75.5931 | 12438 | 226 | 12438 | 42 | 17 | 40.4762 | |
| qzeng-custom | SNP | tv | map_l125_m2_e0 | * | 85.0368 | 75.4382 | 97.4343 | 83.5735 | 12439 | 4050 | 12418 | 327 | 274 | 83.7920 | |
| jli-custom | SNP | * | map_l125_m0_e0 | het | 98.5516 | 98.0575 | 99.0508 | 71.6081 | 12418 | 246 | 12418 | 119 | 39 | 32.7731 | |
| cchapple-custom | INDEL | D1_5 | HG002compoundhet | het | 97.4821 | 96.0069 | 99.0033 | 65.2258 | 1659 | 69 | 12417 | 125 | 120 | 96.0000 | |
| ciseli-custom | SNP | tv | map_l125_m2_e1 | * | 79.4183 | 74.5632 | 84.9497 | 78.4301 | 12420 | 4237 | 12412 | 2199 | 540 | 24.5566 | |
| ckim-isaac | SNP | ti | map_l125_m2_e1 | het | 78.6508 | 64.9290 | 99.7264 | 75.0040 | 12393 | 6694 | 12393 | 34 | 3 | 8.8235 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 81.4087 | 70.0526 | 97.1590 | 70.4588 | 12379 | 5292 | 12380 | 362 | 254 | 70.1657 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 81.4087 | 70.0526 | 97.1590 | 70.4588 | 12379 | 5292 | 12380 | 362 | 254 | 70.1657 | |
| ckim-vqsr | SNP | * | map_l150_m1_e0 | het | 77.5773 | 64.0246 | 98.4082 | 91.2212 | 12367 | 6949 | 12364 | 200 | 1 | 0.5000 | |
| ltrigg-rtg2 | SNP | ti | map_l125_m0_e0 | * | 98.3571 | 96.8735 | 99.8869 | 59.3116 | 12363 | 399 | 12363 | 14 | 4 | 28.5714 | |
| qzeng-custom | SNP | * | map_l125_m2_e0 | homalt | 83.6128 | 72.2475 | 99.2214 | 67.7362 | 12553 | 4822 | 12362 | 97 | 96 | 98.9691 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 81.5223 | 75.9394 | 87.9912 | 60.0478 | 12186 | 3861 | 12361 | 1687 | 1429 | 84.7066 | |
| gduggal-snapvard | INDEL | D1_5 | HG002compoundhet | * | 63.8171 | 65.9528 | 61.8155 | 58.2289 | 8068 | 4165 | 12360 | 7635 | 5847 | 76.5815 | |
| jpowers-varprowl | SNP | ti | map_l150_m2_e0 | het | 96.4300 | 95.8311 | 97.0364 | 82.0218 | 12344 | 537 | 12344 | 377 | 130 | 34.4828 | |
| ltrigg-rtg2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 98.9791 | 98.2989 | 99.6689 | 57.4619 | 12308 | 213 | 12341 | 41 | 28 | 68.2927 | |
| jmaeng-gatk | SNP | tv | map_l125_m2_e1 | * | 84.0047 | 74.0950 | 96.9745 | 86.2788 | 12342 | 4315 | 12340 | 385 | 14 | 3.6364 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 92.2052 | 90.5600 | 93.9113 | 48.2920 | 10754 | 1121 | 12339 | 800 | 737 | 92.1250 | |
| gduggal-snapvard | SNP | ti | map_l150_m2_e0 | het | 90.0316 | 96.5142 | 84.3650 | 84.9671 | 12432 | 449 | 12335 | 2286 | 171 | 7.4803 | |
| cchapple-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 97.8606 | 97.3459 | 98.3807 | 45.3197 | 4328 | 118 | 12333 | 203 | 185 | 91.1330 | |
| mlin-fermikit | SNP | * | HG002compoundhet | het | 92.5921 | 86.9234 | 99.0518 | 44.4618 | 12324 | 1854 | 12327 | 118 | 22 | 18.6441 | |
| anovak-vg | SNP | * | HG002compoundhet | het | 78.0560 | 77.3875 | 78.7362 | 46.6128 | 10972 | 3206 | 12323 | 3328 | 2553 | 76.7127 | |
| gduggal-bwavard | SNP | ti | map_l125_m0_e0 | * | 94.2056 | 97.3045 | 91.2979 | 82.1654 | 12418 | 344 | 12317 | 1174 | 66 | 5.6218 | |
| ckim-gatk | SNP | tv | map_l125_m2_e1 | * | 83.9775 | 73.9449 | 97.1598 | 86.1410 | 12317 | 4340 | 12315 | 360 | 15 | 4.1667 | |
| ndellapenna-hhga | SNP | * | map_l125_m0_e0 | het | 98.3855 | 97.2047 | 99.5955 | 74.1909 | 12310 | 354 | 12310 | 50 | 23 | 46.0000 | |
| rpoplin-dv42 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 96.5231 | 98.6023 | 94.5298 | 62.0425 | 12346 | 175 | 12304 | 712 | 693 | 97.3315 | |
| gduggal-bwaplat | SNP | tv | map_siren | homalt | 83.2538 | 71.3283 | 99.9675 | 62.6549 | 12297 | 4943 | 12293 | 4 | 3 | 75.0000 | |
| ckim-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 98.7777 | 99.3930 | 98.1700 | 65.9733 | 12445 | 76 | 12285 | 229 | 215 | 93.8865 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 92.1962 | 96.6768 | 88.1125 | 56.1680 | 5411 | 186 | 12282 | 1657 | 662 | 39.9517 | |
| astatham-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 98.7180 | 99.3371 | 98.1066 | 65.6768 | 12438 | 83 | 12280 | 237 | 222 | 93.6709 | |
| dgrover-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 98.7577 | 99.3291 | 98.1927 | 66.2045 | 12437 | 84 | 12279 | 226 | 215 | 95.1327 | |
| bgallagher-sentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 98.6266 | 99.2892 | 97.9729 | 65.4849 | 12432 | 89 | 12276 | 254 | 243 | 95.6693 | |