PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
52501-52550 / 86044 show all | |||||||||||||||
| gduggal-bwaplat | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 66.6667 | 50.0000 | 100.0000 | 97.6744 | 1 | 1 | 1 | 0 | 0 | ||
| gduggal-bwaplat | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 66.6667 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-bwaplat | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 66.6667 | 50.0000 | 100.0000 | 98.2143 | 1 | 1 | 1 | 0 | 0 | ||
| gduggal-bwaplat | SNP | ti | map_l125_m0_e0 | hetalt | 22.2222 | 12.5000 | 100.0000 | 98.3871 | 1 | 7 | 1 | 0 | 0 | ||
| gduggal-bwaplat | SNP | ti | map_l150_m0_e0 | hetalt | 50.0000 | 33.3333 | 100.0000 | 98.1818 | 1 | 2 | 1 | 0 | 0 | ||
| gduggal-bwaplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 87.5000 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-bwaplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 83.3333 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-bwaplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 50.0000 | 33.3333 | 100.0000 | 98.6486 | 1 | 2 | 1 | 0 | 0 | ||
| gduggal-bwaplat | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | * | 100.0000 | 100.0000 | 100.0000 | 99.1935 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-bwaplat | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | het | 100.0000 | 100.0000 | 100.0000 | 99.0385 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-bwaplat | SNP | tv | map_l125_m0_e0 | hetalt | 20.0000 | 11.1111 | 100.0000 | 98.9796 | 1 | 8 | 1 | 0 | 0 | ||
| gduggal-bwaplat | SNP | tv | map_l150_m0_e0 | hetalt | 50.0000 | 33.3333 | 100.0000 | 98.9011 | 1 | 2 | 1 | 0 | 0 | ||
| gduggal-bwavard | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 33.3333 | 20.0000 | 100.0000 | 99.8540 | 1 | 4 | 1 | 0 | 0 | ||
| gduggal-bwavard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 40.0000 | 25.0000 | 100.0000 | 99.8510 | 1 | 3 | 1 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I16_PLUS | map_l100_m0_e0 | homalt | 66.6667 | 50.0000 | 100.0000 | 88.8889 | 1 | 1 | 1 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I16_PLUS | map_l125_m0_e0 | homalt | 66.6667 | 50.0000 | 100.0000 | 87.5000 | 1 | 1 | 1 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I16_PLUS | map_l125_m1_e0 | homalt | 50.0000 | 33.3333 | 100.0000 | 93.7500 | 1 | 2 | 1 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I16_PLUS | map_l125_m2_e0 | homalt | 50.0000 | 33.3333 | 100.0000 | 94.4444 | 1 | 2 | 1 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I16_PLUS | map_l125_m2_e1 | homalt | 50.0000 | 33.3333 | 100.0000 | 94.4444 | 1 | 2 | 1 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I16_PLUS | map_l150_m1_e0 | homalt | 50.0000 | 33.3333 | 100.0000 | 90.9091 | 1 | 2 | 1 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I16_PLUS | map_l150_m2_e0 | homalt | 50.0000 | 33.3333 | 100.0000 | 92.3077 | 1 | 2 | 1 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I16_PLUS | map_l150_m2_e1 | homalt | 50.0000 | 33.3333 | 100.0000 | 92.8571 | 1 | 2 | 1 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I16_PLUS | map_l250_m1_e0 | * | 66.6667 | 100.0000 | 50.0000 | 97.5610 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | I16_PLUS | map_l250_m1_e0 | het | 66.6667 | 100.0000 | 50.0000 | 97.3684 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | I16_PLUS | map_l250_m2_e0 | * | 66.6667 | 100.0000 | 50.0000 | 97.7273 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | I16_PLUS | map_l250_m2_e0 | het | 66.6667 | 100.0000 | 50.0000 | 97.5309 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | I16_PLUS | map_l250_m2_e1 | * | 66.6667 | 100.0000 | 50.0000 | 97.7778 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | I16_PLUS | map_l250_m2_e1 | het | 66.6667 | 100.0000 | 50.0000 | 97.5610 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | I16_PLUS | tech_badpromoters | homalt | 66.6667 | 50.0000 | 100.0000 | 50.0000 | 1 | 1 | 1 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 7.1429 | 4.0000 | 33.3333 | 86.3636 | 1 | 24 | 1 | 2 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 40.0000 | 50.0000 | 33.3333 | 85.0000 | 1 | 1 | 1 | 2 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | I6_15 | map_l150_m0_e0 | homalt | 40.0000 | 25.0000 | 100.0000 | 94.7368 | 1 | 3 | 1 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I6_15 | map_l250_m0_e0 | * | 40.0000 | 100.0000 | 25.0000 | 96.8504 | 1 | 0 | 1 | 3 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | I6_15 | map_l250_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 93.3333 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I6_15 | map_l250_m1_e0 | homalt | 50.0000 | 33.3333 | 100.0000 | 95.6522 | 1 | 2 | 1 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I6_15 | map_l250_m2_e0 | homalt | 50.0000 | 33.3333 | 100.0000 | 96.0000 | 1 | 2 | 1 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I6_15 | map_l250_m2_e1 | homalt | 50.0000 | 33.3333 | 100.0000 | 96.4286 | 1 | 2 | 1 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I6_15 | tech_badpromoters | homalt | 50.0000 | 33.3333 | 100.0000 | 66.6667 | 1 | 2 | 1 | 0 | 0 | ||
| gduggal-bwavard | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 66.6667 | 100.0000 | 50.0000 | 95.5556 | 2 | 0 | 1 | 1 | 0 | 0.0000 | |
| gduggal-bwavard | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 66.6667 | 100.0000 | 50.0000 | 94.1176 | 2 | 0 | 1 | 1 | 0 | 0.0000 | |
| gduggal-bwavard | SNP | tv | decoy | * | 0.0000 | 0.0000 | 100.0000 | 99.9989 | 0 | 0 | 1 | 0 | 0 | ||
| gduggal-bwavard | SNP | tv | decoy | homalt | 0.0000 | 0.0000 | 100.0000 | 99.9905 | 0 | 0 | 1 | 0 | 0 | ||
| gduggal-bwavard | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | * | 50.0000 | 100.0000 | 33.3333 | 95.9459 | 1 | 0 | 1 | 2 | 0 | 0.0000 | |
| gduggal-bwavard | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | het | 50.0000 | 100.0000 | 33.3333 | 95.2381 | 1 | 0 | 1 | 2 | 0 | 0.0000 | |
| gduggal-snapfb | INDEL | * | decoy | homalt | 50.0000 | 33.3333 | 100.0000 | 99.9773 | 1 | 2 | 1 | 0 | 0 | ||
| gduggal-snapfb | INDEL | * | func_cds | hetalt | 42.8571 | 60.0000 | 33.3333 | 57.1429 | 3 | 2 | 1 | 2 | 2 | 100.0000 | |
| gduggal-snapfb | INDEL | * | segdupwithalt | * | 100.0000 | 100.0000 | 100.0000 | 99.9971 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-snapfb | INDEL | * | segdupwithalt | het | 100.0000 | 100.0000 | 100.0000 | 99.9953 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-bwavard | INDEL | * | segdupwithalt | * | 100.0000 | 100.0000 | 100.0000 | 99.9978 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-bwavard | INDEL | * | segdupwithalt | het | 100.0000 | 100.0000 | 100.0000 | 99.9973 | 1 | 0 | 1 | 0 | 0 | ||