PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TP Query FPFP gt% FP ma
51101-51150 / 86044 show all
ltrigg-rtg1INDELC6_15lowcmp_SimpleRepeat_homopolymer_gt10hetalt
0.0000
0.0000
100.0000
98.6111
00200
ltrigg-rtg1INDELD16_PLUSdecoyhomalt
100.0000
100.0000
100.0000
97.2973
20200
ltrigg-rtg1INDELD16_PLUSlowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
96.9697
10200
ltrigg-rtg1INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
96.9231
10200
ltrigg-rtg1INDELD16_PLUSmap_l125_m0_e0homalt
100.0000
100.0000
100.0000
93.3333
20200
ltrigg-rtg1INDELD16_PLUSmap_l125_m1_e0hetalt
80.0000
66.6667
100.0000
91.3043
21200
ltrigg-rtg1INDELD16_PLUSmap_l125_m2_e0hetalt
80.0000
66.6667
100.0000
91.3043
21200
ltrigg-rtg1INDELD16_PLUSmap_l125_m2_e1hetalt
66.6667
50.0000
100.0000
91.6667
22200
ltrigg-rtg1INDELD16_PLUSmap_l250_m1_e0het
80.0000
66.6667
100.0000
95.4545
21200
ltrigg-rtg1INDELD16_PLUSmap_l250_m2_e0het
80.0000
66.6667
100.0000
96.0000
21200
ltrigg-rtg1INDELD16_PLUSmap_l250_m2_e1het
80.0000
66.6667
100.0000
96.1538
21200
ltrigg-rtg1INDELD1_5lowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
99.4536
20200
ltrigg-rtg1INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
99.4505
20200
ltrigg-rtg1INDELD1_5lowcmp_SimpleRepeat_homopolymer_gt10*
100.0000
100.0000
100.0000
99.9981
10200
ltrigg-rtg1INDELD1_5lowcmp_SimpleRepeat_homopolymer_gt10hetalt
100.0000
100.0000
100.0000
99.9876
10200
ltrigg-rtg1INDELD1_5map_l150_m0_e0hetalt
100.0000
100.0000
100.0000
98.6207
20200
ltrigg-rtg1INDELD1_5map_l250_m1_e0hetalt
100.0000
100.0000
100.0000
98.8235
30200
ltrigg-rtg1INDELD1_5map_l250_m2_e0hetalt
100.0000
100.0000
100.0000
98.9691
30200
ltrigg-rtg1INDELD1_5map_l250_m2_e1hetalt
100.0000
100.0000
100.0000
98.9950
30200
ltrigg-rtg1INDELD1_5tech_badpromotershetalt
100.0000
100.0000
100.0000
33.3333
20200
ltrigg-rtg1INDELD6_15func_cdshetalt
100.0000
100.0000
100.0000
66.6667
20200
ltrigg-rtg1INDELD6_15lowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
92.3077
20200
ltrigg-rtg1INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
97.7528
20200
ltrigg-rtg1INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
90.4762
20200
ltrigg-rtg1INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
81.8182
20200
ltrigg-rtg1INDELD6_15map_l250_m0_e0homalt
100.0000
100.0000
100.0000
96.5517
20200
ltrigg-rtg1INDELD6_15map_l250_m1_e0hetalt
100.0000
100.0000
100.0000
96.4912
20200
ltrigg-rtg1INDELD6_15map_l250_m2_e0hetalt
100.0000
100.0000
100.0000
96.9231
20200
ltrigg-rtg1INDELD6_15map_l250_m2_e1hetalt
100.0000
100.0000
100.0000
96.9697
20200
ltrigg-rtg1INDELI16_PLUSfunc_cdshomalt
100.0000
100.0000
100.0000
66.6667
20200
ltrigg-rtg1INDELI16_PLUSlowcmp_SimpleRepeat_diTR_51to200*
66.6667
50.0000
100.0000
92.0000
22200
ltrigg-rtg1INDELI16_PLUSlowcmp_SimpleRepeat_quadTR_51to200het
80.0000
66.6667
100.0000
95.1220
21200
ltrigg-rtg1INDELI16_PLUSmap_l125_m0_e0*
44.4444
33.3333
66.6667
88.0000
24210
0.0000
ltrigg-rtg1INDELI16_PLUSmap_l125_m1_e0homalt
80.0000
66.6667
100.0000
84.6154
21200
ltrigg-rtg1INDELI16_PLUSmap_l125_m2_e0homalt
80.0000
66.6667
100.0000
88.8889
21200
ltrigg-rtg1INDELI16_PLUSmap_l125_m2_e1homalt
80.0000
66.6667
100.0000
89.4737
21200
ltrigg-rtg1INDELI16_PLUSmap_l150_m0_e0*
57.1429
50.0000
66.6667
87.5000
22210
0.0000
ltrigg-rtg1INDELI16_PLUSmap_l150_m1_e0homalt
80.0000
66.6667
100.0000
84.6154
21200
ltrigg-rtg1INDELI16_PLUSmap_l150_m2_e0homalt
80.0000
66.6667
100.0000
87.5000
21200
ltrigg-rtg1INDELI16_PLUSmap_l150_m2_e1homalt
80.0000
66.6667
100.0000
87.5000
21200
ltrigg-rtg1INDELI16_PLUStech_badpromotershet
100.0000
100.0000
100.0000
50.0000
20200
ltrigg-rtg1INDELI16_PLUStech_badpromotershomalt
100.0000
100.0000
100.0000
50.0000
20200
ltrigg-rtg1INDELI1_5func_cdshetalt
100.0000
100.0000
100.0000
75.0000
20200
jli-customINDELI6_15map_l250_m2_e0homalt
80.0000
66.6667
100.0000
97.2222
21200
jli-customINDELI6_15map_l250_m2_e1homalt
80.0000
66.6667
100.0000
97.4359
21200
jli-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
90.9091
20200
jli-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
89.4737
20200
jli-customSNP*lowcmp_SimpleRepeat_triTR_51to200homalt
100.0000
100.0000
100.0000
96.4286
20200
jli-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
92.5926
20200
jli-customSNPtilowcmp_SimpleRepeat_homopolymer_6to10hetalt
100.0000
100.0000
100.0000
77.7778
20200