PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TP Query FPFP gt% FP ma
50701-50750 / 86044 show all
hfeng-pmm2INDELI6_15map_l250_m1_e0homalt
80.0000
66.6667
100.0000
97.4026
21200
hfeng-pmm2INDELI6_15map_l250_m2_e0homalt
80.0000
66.6667
100.0000
97.6190
21200
hfeng-pmm2INDELI6_15map_l250_m2_e1homalt
80.0000
66.6667
100.0000
97.7273
21200
hfeng-pmm2SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
91.6667
20200
hfeng-pmm2SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
90.0000
20200
hfeng-pmm2SNP*lowcmp_SimpleRepeat_triTR_51to200homalt
100.0000
100.0000
100.0000
97.8022
20200
hfeng-pmm2SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
96.0000
20200
hfeng-pmm2SNPtilowcmp_SimpleRepeat_homopolymer_6to10hetalt
100.0000
100.0000
100.0000
80.0000
20200
hfeng-pmm2SNPtilowcmp_SimpleRepeat_triTR_51to200homalt
100.0000
100.0000
100.0000
97.4026
20200
hfeng-pmm2SNPtisegduphetalt
100.0000
100.0000
100.0000
98.9011
20200
hfeng-pmm2SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
91.6667
20200
hfeng-pmm2SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
90.0000
20200
hfeng-pmm3INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
80.0000
66.6667
100.0000
98.1982
21200
hfeng-pmm3INDELD16_PLUSdecoyhomalt
100.0000
100.0000
100.0000
98.6755
20200
hfeng-pmm3INDELD16_PLUSlowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
80.0000
100.0000
66.6667
98.0645
20210
0.0000
hfeng-pmm3INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
80.0000
100.0000
66.6667
98.0392
20210
0.0000
hfeng-pmm3INDELD16_PLUSmap_l125_m0_e0homalt
100.0000
100.0000
100.0000
96.8750
20200
hfeng-pmm3INDELD1_5decoyhet
100.0000
100.0000
100.0000
99.9437
20200
hfeng-pmm3INDELD1_5lowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
99.2754
20200
hfeng-pmm3INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
99.2537
20200
hfeng-pmm1INDELI1_5lowcmp_SimpleRepeat_triTR_51to200het
80.0000
100.0000
66.6667
87.5000
20210
0.0000
hfeng-pmm1INDELI1_5map_l250_m1_e0hetalt
100.0000
100.0000
100.0000
97.9798
20200
hfeng-pmm1INDELI1_5map_l250_m2_e0hetalt
100.0000
100.0000
100.0000
98.4375
20200
hfeng-pmm1INDELI1_5map_l250_m2_e1hetalt
100.0000
100.0000
100.0000
98.4615
20200
hfeng-pmm1INDELI6_15lowcmp_SimpleRepeat_homopolymer_gt10*
100.0000
100.0000
100.0000
99.8454
20200
hfeng-pmm1INDELI6_15lowcmp_SimpleRepeat_homopolymer_gt10hetalt
100.0000
100.0000
100.0000
99.4012
20200
hfeng-pmm1INDELI6_15map_l150_m0_e0het
57.1429
50.0000
66.6667
97.4138
22211
100.0000
hfeng-pmm1INDELI6_15map_l250_m1_e0het
57.1429
50.0000
66.6667
97.7273
22211
100.0000
hfeng-pmm1INDELI6_15map_l250_m1_e0homalt
80.0000
66.6667
100.0000
97.0588
21200
hfeng-pmm1INDELI6_15map_l250_m2_e0homalt
80.0000
66.6667
100.0000
97.2603
21200
hfeng-pmm1INDELI6_15map_l250_m2_e1homalt
80.0000
66.6667
100.0000
97.4026
21200
hfeng-pmm1SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
91.6667
20200
hfeng-pmm1SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
90.0000
20200
hfeng-pmm1SNP*lowcmp_SimpleRepeat_triTR_51to200homalt
100.0000
100.0000
100.0000
96.9697
20200
hfeng-pmm1SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
95.8333
20200
hfeng-pmm1SNPtilowcmp_SimpleRepeat_homopolymer_6to10hetalt
100.0000
100.0000
100.0000
80.0000
20200
hfeng-pmm1SNPtilowcmp_SimpleRepeat_triTR_51to200homalt
100.0000
100.0000
100.0000
96.2963
20200
hfeng-pmm1SNPtisegduphetalt
100.0000
100.0000
100.0000
98.8889
20200
hfeng-pmm1SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
91.6667
20200
hfeng-pmm1SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
90.0000
20200
hfeng-pmm2INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
80.0000
66.6667
100.0000
98.2609
21200
hfeng-pmm1INDELD16_PLUSdecoyhomalt
100.0000
100.0000
100.0000
98.5401
20200
hfeng-pmm1INDELD16_PLUSlowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
80.0000
100.0000
66.6667
97.9167
20210
0.0000
hfeng-pmm1INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
80.0000
100.0000
66.6667
97.9021
20210
0.0000
hfeng-pmm1INDELD16_PLUSmap_l125_m0_e0homalt
100.0000
100.0000
100.0000
96.8750
20200
hfeng-pmm1INDELD1_5decoyhet
100.0000
100.0000
100.0000
99.9489
20200
hfeng-pmm1INDELD1_5lowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
99.3548
20200
hfeng-pmm1INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
99.3399
20200
hfeng-pmm1INDELD1_5map_l150_m0_e0hetalt
100.0000
100.0000
100.0000
98.0583
20200
hfeng-pmm1INDELD1_5tech_badpromotershetalt
100.0000
100.0000
100.0000
0.0000
20200