PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1010 1011 1012 1013 1014 1015 1016 1017 1018 ... 1720 1721 » 50651-50700 / 86044 show all
jlack-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	100.0000	100.0000	100.0000	89.4737	2	0	2	0	0
jlack-gatk	SNP	*	lowcmp_SimpleRepeat_triTR_51to200	homalt	100.0000	100.0000	100.0000	97.3333	2	0	2	0	0
jlack-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	100.0000	100.0000	100.0000	93.3333	2	0	2	0	0
jlack-gatk	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	hetalt	100.0000	100.0000	100.0000	77.7778	2	0	2	0	0
jlack-gatk	SNP	ti	lowcmp_SimpleRepeat_triTR_51to200	homalt	100.0000	100.0000	100.0000	96.7213	2	0	2	0	0
jlack-gatk	SNP	ti	segdup	hetalt	80.0000	100.0000	66.6667	98.9324	2	0	2	1	1	100.0000
jlack-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	100.0000	100.0000	100.0000	90.9091	2	0	2	0	0
jlack-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	100.0000	100.0000	100.0000	89.4737	2	0	2	0	0
jli-custom	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged	het	100.0000	100.0000	100.0000	97.0149	2	0	2	0	0
hfeng-pmm2	INDEL	D16_PLUS	decoy	homalt	100.0000	100.0000	100.0000	98.7261	2	0	2	0	0
hfeng-pmm2	INDEL	D16_PLUS	lowcmp_AllRepeats_gt200bp_gt95identity_merged	homalt	80.0000	100.0000	66.6667	98.2249	2	0	2	1	0	0.0000
hfeng-pmm2	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged	homalt	80.0000	100.0000	66.6667	98.2143	2	0	2	1	0	0.0000
hfeng-pmm2	INDEL	D16_PLUS	map_l125_m0_e0	homalt	100.0000	100.0000	100.0000	97.1831	2	0	2	0	0
hfeng-pmm2	INDEL	D1_5	decoy	het	100.0000	100.0000	100.0000	99.9544	2	0	2	0	0
hfeng-pmm2	INDEL	D1_5	lowcmp_AllRepeats_gt200bp_gt95identity_merged	homalt	100.0000	100.0000	100.0000	99.2727	2	0	2	0	0
hfeng-pmm2	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged	homalt	100.0000	100.0000	100.0000	99.2481	2	0	2	0	0
hfeng-pmm2	INDEL	D1_5	map_l150_m0_e0	hetalt	100.0000	100.0000	100.0000	98.1308	2	0	2	0	0
hfeng-pmm2	INDEL	D1_5	tech_badpromoters	hetalt	100.0000	100.0000	100.0000	0.0000	2	0	2	0	0
hfeng-pmm2	INDEL	D6_15	func_cds	hetalt	100.0000	100.0000	100.0000	60.0000	2	0	2	0	0
hfeng-pmm2	INDEL	D6_15	lowcmp_AllRepeats_gt200bp_gt95identity_merged	hetalt	100.0000	100.0000	100.0000	90.0000	2	0	2	0	0
hfeng-pmm2	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged	het	100.0000	100.0000	100.0000	97.9381	2	0	2	0	0
hfeng-pmm2	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged	hetalt	100.0000	100.0000	100.0000	84.6154	2	0	2	0	0
hfeng-pmm2	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged	*	100.0000	100.0000	100.0000	91.3043	2	0	2	0	0
hfeng-pmm2	INDEL	D6_15	map_l250_m0_e0	homalt	100.0000	100.0000	100.0000	97.0149	2	0	2	0	0
hfeng-pmm2	INDEL	D6_15	map_l250_m1_e0	hetalt	100.0000	100.0000	100.0000	95.7447	2	0	2	0	0
hfeng-pmm2	INDEL	D6_15	map_l250_m2_e0	hetalt	100.0000	100.0000	100.0000	96.6102	2	0	2	0	0
hfeng-pmm2	INDEL	D6_15	map_l250_m2_e1	hetalt	100.0000	100.0000	100.0000	96.6667	2	0	2	0	0
hfeng-pmm2	INDEL	I16_PLUS	func_cds	homalt	100.0000	100.0000	100.0000	89.4737	2	0	2	0	0
hfeng-pmm2	INDEL	I16_PLUS	lowcmp_SimpleRepeat_triTR_51to200	*	66.6667	50.0000	100.0000	85.7143	2	2	2	0	0
hfeng-pmm2	INDEL	I16_PLUS	lowcmp_SimpleRepeat_triTR_51to200	hetalt	100.0000	100.0000	100.0000	60.0000	2	0	2	0	0
hfeng-pmm2	INDEL	I16_PLUS	map_l100_m0_e0	homalt	100.0000	100.0000	100.0000	98.4962	2	0	2	0	0
hfeng-pmm2	INDEL	I16_PLUS	map_l100_m1_e0	hetalt	80.0000	66.6667	100.0000	93.3333	2	1	2	0	0
hfeng-pmm2	INDEL	I16_PLUS	map_l100_m2_e0	hetalt	80.0000	66.6667	100.0000	94.4444	2	1	2	0	0
hfeng-pmm2	INDEL	I16_PLUS	map_l100_m2_e1	hetalt	80.0000	66.6667	100.0000	94.5946	2	1	2	0	0
hfeng-pmm2	INDEL	I16_PLUS	map_l125_m0_e0	homalt	100.0000	100.0000	100.0000	98.3193	2	0	2	0	0
hfeng-pmm2	INDEL	I16_PLUS	map_l125_m1_e0	hetalt	80.0000	66.6667	100.0000	90.4762	2	1	2	0	0
hfeng-pmm2	INDEL	I16_PLUS	map_l125_m2_e0	hetalt	80.0000	66.6667	100.0000	92.3077	2	1	2	0	0
hfeng-pmm2	INDEL	I16_PLUS	map_l125_m2_e1	hetalt	80.0000	66.6667	100.0000	92.3077	2	1	2	0	0
hfeng-pmm2	INDEL	I16_PLUS	map_l150_m0_e0	het	80.0000	100.0000	66.6667	97.3913	2	0	2	1	0	0.0000
hfeng-pmm2	INDEL	I16_PLUS	tech_badpromoters	het	100.0000	100.0000	100.0000	71.4286	2	0	2	0	0
hfeng-pmm2	INDEL	I16_PLUS	tech_badpromoters	homalt	100.0000	100.0000	100.0000	66.6667	2	0	2	0	0
hfeng-pmm2	INDEL	I1_5	func_cds	hetalt	100.0000	100.0000	100.0000	33.3333	2	0	2	0	0
hfeng-pmm2	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_51to200	het	89.7959	81.4815	100.0000	98.0952	22	5	2	0	0
hfeng-pmm2	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_51to200	het	80.0000	100.0000	66.6667	87.5000	2	0	2	1	0	0.0000
hfeng-pmm2	INDEL	I1_5	map_l250_m1_e0	hetalt	100.0000	100.0000	100.0000	98.0583	2	0	2	0	0
hfeng-pmm2	INDEL	I1_5	map_l250_m2_e0	hetalt	100.0000	100.0000	100.0000	98.4962	2	0	2	0	0
hfeng-pmm2	INDEL	I1_5	map_l250_m2_e1	hetalt	100.0000	100.0000	100.0000	98.5185	2	0	2	0	0
hfeng-pmm2	INDEL	I6_15	lowcmp_SimpleRepeat_homopolymer_gt10	*	100.0000	100.0000	100.0000	99.8596	2	0	2	0	0
hfeng-pmm2	INDEL	I6_15	lowcmp_SimpleRepeat_homopolymer_gt10	hetalt	100.0000	100.0000	100.0000	99.4318	2	0	2	0	0
hfeng-pmm2	INDEL	I6_15	map_l250_m1_e0	het	57.1429	50.0000	66.6667	98.1250	2	2	2	1	1	100.0000

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge