PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
5001-5050 / 86044 show all | |||||||||||||||
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 98.0502 | 96.8343 | 99.2971 | 55.9217 | 15539 | 508 | 15540 | 110 | 95 | 86.3636 | |
| ckim-isaac | SNP | * | map_l100_m1_e0 | homalt | 73.0435 | 57.5492 | 99.9550 | 54.3192 | 15540 | 11463 | 15540 | 7 | 7 | 100.0000 | |
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 98.0378 | 96.8281 | 99.2780 | 56.6258 | 15538 | 509 | 15539 | 113 | 101 | 89.3805 | |
| jpowers-varprowl | SNP | tv | map_l125_m1_e0 | * | 97.1666 | 96.9968 | 97.3371 | 76.5818 | 15535 | 481 | 15535 | 425 | 117 | 27.5294 | |
| gduggal-snapfb | SNP | tv | map_l100_m2_e0 | het | 97.1053 | 98.4471 | 95.7997 | 70.6844 | 15532 | 245 | 15532 | 681 | 223 | 32.7460 | |
| anovak-vg | SNP | ti | map_l100_m2_e0 | homalt | 92.0181 | 85.6628 | 99.3921 | 60.4480 | 15684 | 2625 | 15532 | 95 | 90 | 94.7368 | |
| ckim-vqsr | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 98.0024 | 96.5790 | 99.4683 | 68.2096 | 15527 | 550 | 15528 | 83 | 69 | 83.1325 | |
| ckim-vqsr | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 98.0024 | 96.5790 | 99.4683 | 68.2096 | 15527 | 550 | 15528 | 83 | 69 | 83.1325 | |
| ndellapenna-hhga | SNP | tv | map_l100_m2_e0 | het | 99.0369 | 98.4154 | 99.6662 | 64.6823 | 15527 | 250 | 15527 | 52 | 17 | 32.6923 | |
| hfeng-pmm3 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 98.0795 | 96.5665 | 99.6406 | 67.0543 | 15525 | 552 | 15525 | 56 | 32 | 57.1429 | |
| hfeng-pmm3 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 98.0795 | 96.5665 | 99.6406 | 67.0543 | 15525 | 552 | 15525 | 56 | 32 | 57.1429 | |
| rpoplin-dv42 | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 97.0738 | 98.6992 | 95.5010 | 61.0266 | 15555 | 205 | 15517 | 731 | 705 | 96.4432 | |
| cchapple-custom | SNP | tv | map_l100_m2_e0 | het | 96.2979 | 98.0731 | 94.5857 | 75.5847 | 15473 | 304 | 15513 | 888 | 133 | 14.9775 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.6190 | 99.4381 | 99.8005 | 49.8273 | 14687 | 83 | 15511 | 31 | 20 | 64.5161 | |
| ckim-gatk | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 98.9501 | 99.4036 | 98.5008 | 62.9678 | 15666 | 94 | 15506 | 236 | 204 | 86.4407 | |
| ltrigg-rtg1 | SNP | tv | map_l100_m2_e0 | het | 98.9599 | 98.3013 | 99.6273 | 57.1739 | 15509 | 268 | 15505 | 58 | 5 | 8.6207 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 97.6195 | 96.5975 | 98.6634 | 57.7294 | 15501 | 546 | 15502 | 210 | 201 | 95.7143 | |
| astatham-gatk | SNP | * | map_l150_m2_e1 | het | 86.2859 | 76.1332 | 99.5631 | 83.9622 | 15503 | 4860 | 15497 | 68 | 27 | 39.7059 | |
| gduggal-snapplat | SNP | * | map_l125_m2_e0 | homalt | 94.2904 | 89.2489 | 99.9355 | 69.8671 | 15507 | 1868 | 15497 | 10 | 9 | 90.0000 | |
| dgrover-gatk | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 98.9340 | 99.3274 | 98.5437 | 62.8374 | 15654 | 106 | 15496 | 229 | 203 | 88.6463 | |
| ckim-isaac | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 95.2997 | 91.1929 | 99.7939 | 58.4384 | 15480 | 1495 | 15495 | 32 | 23 | 71.8750 | |
| ckim-isaac | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 95.2997 | 91.1929 | 99.7939 | 58.4384 | 15480 | 1495 | 15495 | 32 | 23 | 71.8750 | |
| astatham-gatk | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 98.9118 | 99.3147 | 98.5122 | 62.5969 | 15652 | 108 | 15494 | 234 | 208 | 88.8889 | |
| bgallagher-sentieon | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 98.8361 | 99.3147 | 98.3621 | 62.3698 | 15652 | 108 | 15494 | 258 | 231 | 89.5349 | |
| jlack-gatk | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 96.5684 | 96.5352 | 96.6016 | 59.0391 | 15491 | 556 | 15492 | 545 | 381 | 69.9083 | |
| jpowers-varprowl | SNP | tv | map_l100_m2_e1 | het | 96.9210 | 97.1703 | 96.6729 | 76.0613 | 15487 | 451 | 15487 | 533 | 100 | 18.7617 | |
| ckim-isaac | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 90.5655 | 92.3733 | 88.8270 | 56.6366 | 16460 | 1359 | 15479 | 1947 | 1601 | 82.2291 | |
| ckim-vqsr | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 98.8985 | 99.2195 | 98.5796 | 63.0301 | 15637 | 123 | 15477 | 223 | 202 | 90.5830 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 98.3079 | 97.1210 | 99.5241 | 52.9586 | 15585 | 462 | 15476 | 74 | 51 | 68.9189 | |
| cchapple-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 97.4083 | 95.5986 | 99.2879 | 34.0400 | 7059 | 325 | 15476 | 111 | 102 | 91.8919 | |
| gduggal-snapvard | SNP | tv | map_l125_m1_e0 | * | 93.0563 | 96.9343 | 89.4767 | 78.3907 | 15525 | 491 | 15475 | 1820 | 120 | 6.5934 | |
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 99.2504 | 99.2513 | 99.2495 | 62.6333 | 15642 | 118 | 15472 | 117 | 78 | 66.6667 | |
| ckim-gatk | SNP | ti | map_l125_m2_e0 | het | 89.0209 | 81.9824 | 97.3815 | 86.6933 | 15475 | 3401 | 15471 | 416 | 41 | 9.8558 | |
| gduggal-snapvard | SNP | tv | map_l100_m2_e1 | het | 92.6451 | 97.4464 | 88.2947 | 79.7695 | 15531 | 407 | 15471 | 2051 | 143 | 6.9722 | |
| cchapple-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 97.0372 | 96.1312 | 97.9605 | 45.4439 | 14213 | 572 | 15466 | 322 | 303 | 94.0994 | |
| ckim-isaac | SNP | tv | map_l100_m2_e1 | * | 75.8227 | 61.1518 | 99.7549 | 67.3250 | 15461 | 9822 | 15464 | 38 | 12 | 31.5789 | |
| jmaeng-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.7400 | 96.1684 | 99.3638 | 68.4150 | 15461 | 616 | 15462 | 99 | 69 | 69.6970 | |
| jmaeng-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 97.7400 | 96.1684 | 99.3638 | 68.4150 | 15461 | 616 | 15462 | 99 | 69 | 69.6970 | |
| rpoplin-dv42 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 95.5845 | 92.0383 | 99.4149 | 38.4055 | 15375 | 1330 | 15461 | 91 | 90 | 98.9011 | |
| rpoplin-dv42 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 95.5845 | 92.0383 | 99.4149 | 38.4055 | 15375 | 1330 | 15461 | 91 | 90 | 98.9011 | |
| ltrigg-rtg2 | SNP | tv | map_l100_m2_e0 | het | 98.8114 | 98.0098 | 99.6262 | 53.3646 | 15463 | 314 | 15459 | 58 | 2 | 3.4483 | |
| ckim-gatk | SNP | * | map_l150_m2_e1 | het | 85.0232 | 75.9171 | 96.6114 | 90.2821 | 15459 | 4904 | 15453 | 542 | 42 | 7.7491 | |
| asubramanian-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 96.6230 | 97.5440 | 95.7192 | 65.8529 | 14258 | 359 | 15451 | 691 | 402 | 58.1766 | |
| gduggal-bwavard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 95.7068 | 91.9529 | 99.7804 | 63.8066 | 15609 | 1366 | 15447 | 34 | 16 | 47.0588 | |
| gduggal-bwavard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 95.7068 | 91.9529 | 99.7804 | 63.8066 | 15609 | 1366 | 15447 | 34 | 16 | 47.0588 | |
| jmaeng-gatk | SNP | * | map_l150_m2_e1 | het | 84.9216 | 75.8827 | 96.4049 | 90.5037 | 15452 | 4911 | 15446 | 576 | 40 | 6.9444 | |
| egarrison-hhga | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 97.0336 | 96.1684 | 97.9144 | 65.7408 | 15461 | 616 | 15446 | 329 | 175 | 53.1915 | |
| egarrison-hhga | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.0336 | 96.1684 | 97.9144 | 65.7408 | 15461 | 616 | 15446 | 329 | 175 | 53.1915 | |
| jmaeng-gatk | SNP | ti | map_l125_m2_e0 | het | 88.8720 | 81.8288 | 97.2418 | 86.9822 | 15446 | 3430 | 15442 | 438 | 39 | 8.9041 | |
| jmaeng-gatk | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 98.6853 | 98.9657 | 98.4065 | 63.1662 | 15597 | 163 | 15439 | 250 | 223 | 89.2000 | |