PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TP Query FPFP gt% FP ma
50351-50400 / 86044 show all
egarrison-hhgaINDELI16_PLUSmap_l150_m0_e0het
80.0000
100.0000
66.6667
88.8889
20210
0.0000
egarrison-hhgaINDELI16_PLUSmap_l150_m1_e0hetalt
100.0000
100.0000
100.0000
75.0000
20200
egarrison-hhgaINDELI16_PLUSmap_l150_m2_e0hetalt
100.0000
100.0000
100.0000
75.0000
20200
egarrison-hhgaINDELI16_PLUSmap_l150_m2_e1hetalt
100.0000
100.0000
100.0000
75.0000
20200
egarrison-hhgaINDELI16_PLUStech_badpromotershet
100.0000
100.0000
100.0000
66.6667
20200
egarrison-hhgaINDELI16_PLUStech_badpromotershomalt
100.0000
100.0000
100.0000
66.6667
20200
egarrison-hhgaINDELI1_5func_cdshetalt
100.0000
100.0000
100.0000
50.0000
20200
ckim-isaacINDELI6_15map_l100_m0_e0homalt
28.5714
16.6667
100.0000
91.6667
210200
ckim-isaacINDELI6_15map_l125_m0_e0het
50.0000
33.3333
100.0000
98.4252
36200
ckim-isaacINDELI6_15map_l125_m0_e0homalt
50.0000
33.3333
100.0000
86.6667
24200
ckim-isaacINDELI6_15map_l150_m0_e0het
66.6667
50.0000
100.0000
98.1982
22200
ckim-isaacINDELI6_15map_l250_m2_e0*
40.0000
25.0000
100.0000
99.0099
26200
ckim-isaacINDELI6_15map_l250_m2_e1*
40.0000
25.0000
100.0000
99.0431
26200
ckim-isaacINDELI6_15tech_badpromotershomalt
80.0000
66.6667
100.0000
60.0000
21200
ckim-isaacSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
0.0000
20200
ckim-isaacSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
0.0000
20200
ckim-isaacSNP*map_l250_m1_e0hetalt
66.6667
50.0000
100.0000
92.3077
22200
ckim-isaacSNP*map_l250_m2_e0hetalt
57.1429
40.0000
100.0000
93.7500
23200
ckim-isaacSNP*map_l250_m2_e1hetalt
57.1429
40.0000
100.0000
93.7500
23200
ckim-isaacSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
60.0000
20200
ckim-isaacSNPtilowcmp_SimpleRepeat_homopolymer_6to10hetalt
100.0000
100.0000
100.0000
75.0000
20200
ckim-isaacSNPtimap_l250_m1_e0hetalt
66.6667
50.0000
100.0000
88.2353
22200
ckim-isaacSNPtimap_l250_m2_e0hetalt
57.1429
40.0000
100.0000
90.4762
23200
ckim-isaacSNPtimap_l250_m2_e1hetalt
57.1429
40.0000
100.0000
90.4762
23200
ckim-isaacSNPtisegduphetalt
100.0000
100.0000
100.0000
97.1014
20200
ckim-isaacSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
0.0000
20200
ckim-isaacSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
0.0000
20200
ckim-isaacSNPtvmap_l250_m1_e0hetalt
66.6667
50.0000
100.0000
92.3077
22200
ckim-isaacSNPtvmap_l250_m2_e0hetalt
57.1429
40.0000
100.0000
93.7500
23200
ckim-isaacSNPtvmap_l250_m2_e1hetalt
57.1429
40.0000
100.0000
93.7500
23200
ckim-vqsrINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
97.7273
20200
ckim-vqsrINDELD16_PLUSdecoyhomalt
100.0000
100.0000
100.0000
99.1304
20200
egarrison-hhgaINDELI1_5map_l250_m1_e0hetalt
100.0000
100.0000
100.0000
98.3051
20200
egarrison-hhgaINDELI1_5map_l250_m2_e0hetalt
100.0000
100.0000
100.0000
98.6667
20200
egarrison-hhgaINDELI1_5map_l250_m2_e1hetalt
100.0000
100.0000
100.0000
98.6842
20200
egarrison-hhgaINDELI6_15lowcmp_SimpleRepeat_homopolymer_gt10*
100.0000
100.0000
100.0000
99.8241
20200
egarrison-hhgaINDELI6_15lowcmp_SimpleRepeat_homopolymer_gt10hetalt
100.0000
100.0000
100.0000
99.1489
20200
egarrison-hhgaINDELI6_15map_l150_m0_e0het
66.6667
50.0000
100.0000
98.1132
22200
egarrison-hhgaSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
86.6667
20200
egarrison-hhgaSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
84.6154
20200
egarrison-hhgaSNP*map_l250_m1_e0hetalt
66.6667
50.0000
100.0000
95.9184
22200
egarrison-hhgaSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
95.9184
20200
egarrison-hhgaSNPtilowcmp_SimpleRepeat_homopolymer_6to10hetalt
100.0000
100.0000
100.0000
81.8182
20200
egarrison-hhgaSNPtimap_l250_m1_e0hetalt
66.6667
50.0000
100.0000
93.3333
22200
egarrison-hhgaSNPtisegduphetalt
100.0000
100.0000
100.0000
99.1189
20200
egarrison-hhgaSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
86.6667
20200
egarrison-hhgaSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
84.6154
20200
egarrison-hhgaSNPtvmap_l250_m1_e0hetalt
66.6667
50.0000
100.0000
95.9184
22200
eyeh-varpipeINDEL*decoyhetalt
100.0000
100.0000
100.0000
99.7080
10200
eyeh-varpipeINDEL*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
50.0000
33.3333
100.0000
98.8764
12200