PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
50301-50350 / 86044 show all | |||||||||||||||
| gduggal-snapfb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 2.8369 | 100.0000 | 1.4388 | 74.9550 | 2 | 0 | 2 | 137 | 3 | 2.1898 | |
| gduggal-snapfb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 3.8462 | 100.0000 | 1.9608 | 75.9434 | 2 | 0 | 2 | 100 | 3 | 3.0000 | |
| gduggal-snapplat | INDEL | * | decoy | * | 46.1538 | 30.0000 | 100.0000 | 99.9940 | 3 | 7 | 2 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D1_5 | decoy | * | 85.7143 | 75.0000 | 100.0000 | 99.9884 | 3 | 1 | 2 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D6_15 | func_cds | homalt | 40.0000 | 25.0000 | 100.0000 | 50.0000 | 3 | 9 | 2 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D6_15 | map_l125_m1_e0 | hetalt | 19.0476 | 10.5263 | 100.0000 | 98.3333 | 2 | 17 | 2 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D6_15 | map_l125_m2_e0 | hetalt | 19.0476 | 10.5263 | 100.0000 | 98.5294 | 2 | 17 | 2 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D6_15 | map_l125_m2_e1 | hetalt | 18.1818 | 10.0000 | 100.0000 | 98.5507 | 2 | 18 | 2 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D6_15 | map_l150_m0_e0 | homalt | 72.7273 | 57.1429 | 100.0000 | 97.0149 | 4 | 3 | 2 | 0 | 0 | ||
| gduggal-snapplat | INDEL | I1_5 | map_l150_m1_e0 | hetalt | 44.4444 | 33.3333 | 66.6667 | 99.3392 | 3 | 6 | 2 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | I1_5 | map_l150_m2_e0 | hetalt | 44.4444 | 33.3333 | 66.6667 | 99.4175 | 3 | 6 | 2 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | I6_15 | map_l125_m1_e0 | het | 10.2564 | 6.6667 | 22.2222 | 94.8864 | 2 | 28 | 2 | 7 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | map_l125_m2_e0 | het | 10.2564 | 6.6667 | 22.2222 | 95.4315 | 2 | 28 | 2 | 7 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | map_l125_m2_e1 | het | 10.2564 | 6.6667 | 22.2222 | 95.5882 | 2 | 28 | 2 | 7 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | map_l150_m1_e0 | * | 13.3333 | 8.0000 | 40.0000 | 97.7974 | 2 | 23 | 2 | 3 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | map_l150_m2_e0 | * | 13.3333 | 8.0000 | 40.0000 | 98.0392 | 2 | 23 | 2 | 3 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | map_l150_m2_e1 | * | 12.5000 | 7.4074 | 40.0000 | 98.1132 | 2 | 25 | 2 | 3 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | tech_badpromoters | het | 36.3636 | 28.5714 | 50.0000 | 63.6364 | 2 | 5 | 2 | 2 | 0 | 0.0000 | |
| gduggal-snapplat | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 12.1212 | 28.5714 | 7.6923 | 96.3121 | 2 | 5 | 2 | 24 | 0 | 0.0000 | |
| gduggal-snapplat | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 80.0000 | 100.0000 | 66.6667 | 97.1429 | 2 | 0 | 2 | 1 | 1 | 100.0000 | |
| ghariani-varprowl | INDEL | D6_15 | map_l250_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.0784 | 2 | 0 | 2 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 57.1429 | 50.0000 | 66.6667 | 85.7143 | 2 | 2 | 2 | 1 | 1 | 100.0000 | |
| ghariani-varprowl | INDEL | I16_PLUS | map_l150_m0_e0 | * | 44.4444 | 50.0000 | 40.0000 | 86.4865 | 2 | 2 | 2 | 3 | 2 | 66.6667 | |
| ghariani-varprowl | INDEL | I16_PLUS | map_l150_m0_e0 | het | 57.1429 | 100.0000 | 40.0000 | 84.8485 | 2 | 0 | 2 | 3 | 2 | 66.6667 | |
| ghariani-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 6.3636 | 3.3981 | 50.0000 | 96.8254 | 7 | 199 | 2 | 2 | 1 | 50.0000 | |
| ghariani-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 37.3333 | 25.9259 | 66.6667 | 97.2727 | 7 | 20 | 2 | 1 | 0 | 0.0000 | |
| ghariani-varprowl | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 12.5000 | 8.3333 | 25.0000 | 91.3978 | 2 | 22 | 2 | 6 | 6 | 100.0000 | |
| ghariani-varprowl | INDEL | I6_15 | map_l150_m0_e0 | het | 44.4444 | 50.0000 | 40.0000 | 97.3958 | 2 | 2 | 2 | 3 | 2 | 66.6667 | |
| ghariani-varprowl | INDEL | I6_15 | map_l150_m0_e0 | homalt | 66.6667 | 50.0000 | 100.0000 | 93.1034 | 2 | 2 | 2 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I6_15 | map_l250_m1_e0 | het | 44.4444 | 50.0000 | 40.0000 | 97.8541 | 2 | 2 | 2 | 3 | 2 | 66.6667 | |
| ghariani-varprowl | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 66.6667 | 100.0000 | 50.0000 | 95.0000 | 2 | 0 | 2 | 2 | 0 | 0.0000 | |
| ghariani-varprowl | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 80.0000 | 100.0000 | 66.6667 | 94.8276 | 2 | 0 | 2 | 1 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 80.0000 | 66.6667 | 100.0000 | 98.1982 | 2 | 1 | 2 | 0 | 0 | ||
| egarrison-hhga | INDEL | C6_15 | * | * | 20.0000 | 14.2857 | 33.3333 | 95.4887 | 1 | 6 | 2 | 4 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | C6_15 | HG002complexvar | * | 40.0000 | 25.0000 | 100.0000 | 96.7213 | 1 | 3 | 2 | 0 | 0 | ||
| egarrison-hhga | INDEL | D16_PLUS | decoy | homalt | 100.0000 | 100.0000 | 100.0000 | 97.8261 | 2 | 0 | 2 | 0 | 0 | ||
| egarrison-hhga | INDEL | D16_PLUS | map_l100_m0_e0 | hetalt | 57.1429 | 50.0000 | 66.6667 | 85.0000 | 2 | 2 | 2 | 1 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | D16_PLUS | map_l125_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 95.1220 | 2 | 0 | 2 | 0 | 0 | ||
| egarrison-hhga | INDEL | D1_5 | decoy | het | 100.0000 | 100.0000 | 100.0000 | 99.9511 | 2 | 0 | 2 | 0 | 0 | ||
| egarrison-hhga | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 99.6117 | 2 | 0 | 2 | 0 | 0 | ||
| egarrison-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 99.6008 | 2 | 0 | 2 | 0 | 0 | ||
| egarrison-hhga | INDEL | D1_5 | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.8261 | 2 | 0 | 2 | 0 | 0 | ||
| egarrison-hhga | INDEL | D6_15 | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 60.0000 | 2 | 0 | 2 | 0 | 0 | ||
| egarrison-hhga | INDEL | D6_15 | map_l125_m0_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 94.4444 | 3 | 3 | 2 | 0 | 0 | ||
| egarrison-hhga | INDEL | D6_15 | map_l250_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 97.3333 | 2 | 0 | 2 | 0 | 0 | ||
| egarrison-hhga | INDEL | I16_PLUS | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 86.6667 | 2 | 0 | 2 | 0 | 0 | ||
| egarrison-hhga | INDEL | I16_PLUS | map_l100_m1_e0 | homalt | 50.0000 | 40.0000 | 66.6667 | 92.6829 | 2 | 3 | 2 | 1 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | map_l100_m2_e0 | homalt | 50.0000 | 40.0000 | 66.6667 | 94.6429 | 2 | 3 | 2 | 1 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | map_l100_m2_e1 | homalt | 50.0000 | 40.0000 | 66.6667 | 94.6429 | 2 | 3 | 2 | 1 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | map_l125_m0_e0 | het | 66.6667 | 66.6667 | 66.6667 | 91.8919 | 2 | 1 | 2 | 1 | 0 | 0.0000 | |