PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
50201-50250 / 86044 show all | |||||||||||||||
| anovak-vg | INDEL | I16_PLUS | map_l125_m2_e1 | homalt | 30.7692 | 33.3333 | 28.5714 | 81.5789 | 1 | 2 | 2 | 5 | 4 | 80.0000 | |
| anovak-vg | INDEL | I16_PLUS | map_l150_m1_e0 | * | 25.0000 | 18.1818 | 40.0000 | 78.2609 | 2 | 9 | 2 | 3 | 3 | 100.0000 | |
| anovak-vg | INDEL | I16_PLUS | map_l150_m1_e0 | homalt | 36.3636 | 33.3333 | 40.0000 | 72.2222 | 1 | 2 | 2 | 3 | 3 | 100.0000 | |
| anovak-vg | INDEL | I16_PLUS | map_l150_m2_e0 | * | 23.5294 | 18.1818 | 33.3333 | 81.8182 | 2 | 9 | 2 | 4 | 3 | 75.0000 | |
| anovak-vg | INDEL | I16_PLUS | map_l150_m2_e0 | homalt | 33.3333 | 33.3333 | 33.3333 | 76.0000 | 1 | 2 | 2 | 4 | 3 | 75.0000 | |
| anovak-vg | INDEL | I16_PLUS | map_l150_m2_e1 | * | 23.5294 | 18.1818 | 33.3333 | 81.8182 | 2 | 9 | 2 | 4 | 3 | 75.0000 | |
| anovak-vg | INDEL | I16_PLUS | map_l150_m2_e1 | homalt | 33.3333 | 33.3333 | 33.3333 | 76.0000 | 1 | 2 | 2 | 4 | 3 | 75.0000 | |
| gduggal-snapfb | INDEL | C1_5 | * | homalt | 0.0000 | 0.0000 | 10.5263 | 90.1554 | 0 | 0 | 2 | 17 | 1 | 5.8824 | |
| gduggal-snapfb | INDEL | C1_5 | HG002complexvar | homalt | 0.0000 | 0.0000 | 22.2222 | 80.0000 | 0 | 0 | 2 | 7 | 1 | 14.2857 | |
| gduggal-snapfb | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 0.0000 | 0.0000 | 33.3333 | 68.4211 | 0 | 1 | 2 | 4 | 0 | 0.0000 | |
| gduggal-snapfb | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 0.0000 | 0.0000 | 40.0000 | 54.5455 | 0 | 1 | 2 | 3 | 0 | 0.0000 | |
| gduggal-snapfb | INDEL | C6_15 | * | hetalt | 0.0000 | 0.0000 | 50.0000 | 98.0000 | 0 | 0 | 2 | 2 | 2 | 100.0000 | |
| gduggal-snapfb | INDEL | C6_15 | HG002complexvar | hetalt | 0.0000 | 0.0000 | 50.0000 | 96.1538 | 0 | 0 | 2 | 2 | 2 | 100.0000 | |
| gduggal-snapfb | INDEL | C6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 50.0000 | 97.0149 | 0 | 0 | 2 | 2 | 2 | 100.0000 | |
| gduggal-snapfb | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 0.0000 | 0.0000 | 28.5714 | 93.0693 | 0 | 0 | 2 | 5 | 3 | 60.0000 | |
| gduggal-snapfb | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 0.0000 | 66.6667 | 97.4138 | 0 | 0 | 2 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 0.0000 | 0.0000 | 100.0000 | 88.2353 | 0 | 0 | 2 | 0 | 0 | ||
| gduggal-snapfb | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 100.0000 | 87.5000 | 0 | 0 | 2 | 0 | 0 | ||
| gduggal-snapfb | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 0.0000 | 0.0000 | 40.0000 | 93.2432 | 0 | 0 | 2 | 3 | 2 | 66.6667 | |
| gduggal-snapfb | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 0.0000 | 0.0000 | 28.5714 | 93.0693 | 0 | 0 | 2 | 5 | 3 | 60.0000 | |
| gduggal-snapfb | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 0.0000 | 0.0000 | 66.6667 | 97.4138 | 0 | 0 | 2 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | D1_5 | decoy | het | 100.0000 | 100.0000 | 100.0000 | 99.9690 | 2 | 0 | 2 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 99.6805 | 2 | 0 | 2 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 99.6678 | 2 | 0 | 2 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D1_5 | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.3333 | 2 | 0 | 2 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D1_5 | map_l250_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 97.5000 | 2 | 1 | 2 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D1_5 | map_l250_m2_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 97.8261 | 2 | 1 | 2 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D1_5 | map_l250_m2_e1 | hetalt | 80.0000 | 66.6667 | 100.0000 | 97.8947 | 2 | 1 | 2 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 50.0000 | 33.3333 | 100.0000 | 97.4684 | 2 | 4 | 2 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 80.0000 | 66.6667 | 100.0000 | 95.5556 | 2 | 1 | 2 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 66.6667 | 50.0000 | 100.0000 | 97.4684 | 2 | 2 | 2 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 95.5556 | 2 | 0 | 2 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 50.0000 | 33.3333 | 100.0000 | 99.5745 | 3 | 6 | 2 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D6_15 | map_l250_m0_e0 | het | 66.6667 | 50.0000 | 100.0000 | 96.4912 | 2 | 2 | 2 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I1_5 | map_l150_m0_e0 | hetalt | 80.0000 | 100.0000 | 66.6667 | 96.5517 | 3 | 0 | 2 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | I1_5 | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.1132 | 2 | 0 | 2 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I1_5 | map_l250_m2_e0 | hetalt | 66.6667 | 100.0000 | 50.0000 | 97.0149 | 2 | 0 | 2 | 2 | 0 | 0.0000 | |
| gduggal-snapfb | INDEL | I1_5 | map_l250_m2_e1 | hetalt | 66.6667 | 100.0000 | 50.0000 | 97.0370 | 2 | 0 | 2 | 2 | 0 | 0.0000 | |
| gduggal-snapplat | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 83.3333 | 2 | 0 | 2 | 0 | 0 | ||
| gduggal-snapplat | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | het | 28.5714 | 33.3333 | 25.0000 | 98.3968 | 2 | 4 | 2 | 6 | 0 | 0.0000 | |
| gduggal-snapplat | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 80.0000 | 100.0000 | 66.6667 | 96.2500 | 2 | 0 | 2 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | SNP | ti | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.0099 | 2 | 0 | 2 | 0 | 0 | ||
| gduggal-snapvard | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 2.1108 | 1.1142 | 20.0000 | 87.1795 | 4 | 355 | 2 | 8 | 1 | 12.5000 | |
| gduggal-snapvard | INDEL | C1_5 | func_cds | homalt | 0.0000 | 0.0000 | 100.0000 | 80.0000 | 0 | 0 | 2 | 0 | 0 | ||
| gduggal-snapvard | INDEL | C1_5 | map_l250_m0_e0 | * | 0.0000 | 0.0000 | 20.0000 | 98.5229 | 0 | 0 | 2 | 8 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | C6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 66.6667 | 100.0000 | 50.0000 | 99.4975 | 1 | 0 | 2 | 2 | 2 | 100.0000 | |
| gduggal-snapvard | INDEL | C6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 66.6667 | 100.0000 | 50.0000 | 99.4483 | 1 | 0 | 2 | 2 | 2 | 100.0000 | |
| gduggal-snapvard | INDEL | C6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 0.0000 | 0.0000 | 13.3333 | 83.5165 | 0 | 0 | 2 | 13 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | C6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 0.0000 | 0.0000 | 13.3333 | 82.7586 | 0 | 0 | 2 | 13 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | C6_15 | map_l100_m1_e0 | het | 0.0000 | 0.0000 | 22.2222 | 96.9283 | 0 | 0 | 2 | 7 | 1 | 14.2857 | |