PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 996 997 998 999 1000 1001 1002 1003 1004 ... 1720 1721 » 49951-50000 / 86044 show all
ltrigg-rtg2	INDEL	D1_5	map_l250_m1_e0	hetalt	100.0000	100.0000	100.0000	98.8636	3	0	2	0	0
ltrigg-rtg2	INDEL	D1_5	map_l250_m2_e0	hetalt	100.0000	100.0000	100.0000	99.0000	3	0	2	0	0
ltrigg-rtg2	INDEL	D1_5	map_l250_m2_e1	hetalt	100.0000	100.0000	100.0000	99.0244	3	0	2	0	0
ltrigg-rtg2	INDEL	D1_5	tech_badpromoters	hetalt	100.0000	100.0000	100.0000	33.3333	2	0	2	0	0
ltrigg-rtg2	INDEL	D6_15	func_cds	hetalt	100.0000	100.0000	100.0000	66.6667	2	0	2	0	0
ltrigg-rtg2	INDEL	D6_15	lowcmp_AllRepeats_gt200bp_gt95identity_merged	hetalt	100.0000	100.0000	100.0000	92.0000	2	0	2	0	0
ltrigg-rtg2	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged	het	100.0000	100.0000	100.0000	97.8723	2	0	2	0	0
ltrigg-rtg2	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged	hetalt	100.0000	100.0000	100.0000	90.9091	2	0	2	0	0
ltrigg-rtg2	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged	*	100.0000	100.0000	100.0000	75.0000	2	0	2	0	0
ltrigg-rtg2	INDEL	D6_15	map_l250_m0_e0	homalt	100.0000	100.0000	100.0000	94.7368	2	0	2	0	0
ltrigg-rtg2	INDEL	D6_15	map_l250_m1_e0	hetalt	100.0000	100.0000	100.0000	96.5517	2	0	2	0	0
ltrigg-rtg2	INDEL	D6_15	map_l250_m2_e0	hetalt	100.0000	100.0000	100.0000	96.9231	2	0	2	0	0
ltrigg-rtg2	INDEL	D6_15	map_l250_m2_e1	hetalt	100.0000	100.0000	100.0000	96.9697	2	0	2	0	0
ltrigg-rtg2	INDEL	I16_PLUS	func_cds	homalt	100.0000	100.0000	100.0000	66.6667	2	0	2	0	0
ltrigg-rtg2	INDEL	I16_PLUS	lowcmp_SimpleRepeat_diTR_51to200	*	66.6667	50.0000	100.0000	90.0000	2	2	2	0	0
ltrigg-rtg2	INDEL	I16_PLUS	lowcmp_SimpleRepeat_quadTR_51to200	het	80.0000	66.6667	100.0000	95.4545	2	1	2	0	0
ltrigg-rtg2	INDEL	I16_PLUS	map_l125_m0_e0	het	66.6667	66.6667	66.6667	80.0000	2	1	2	1	0	0.0000
ltrigg-rtg2	INDEL	I16_PLUS	map_l125_m1_e0	homalt	80.0000	66.6667	100.0000	84.6154	2	1	2	0	0
ltrigg-rtg2	INDEL	I16_PLUS	map_l125_m2_e0	homalt	80.0000	66.6667	100.0000	88.8889	2	1	2	0	0
ltrigg-rtg2	INDEL	I16_PLUS	map_l125_m2_e1	homalt	80.0000	66.6667	100.0000	88.8889	2	1	2	0	0
ltrigg-rtg2	INDEL	I16_PLUS	map_l150_m0_e0	het	80.0000	100.0000	66.6667	75.0000	2	0	2	1	0	0.0000
ltrigg-rtg2	INDEL	I16_PLUS	map_l150_m1_e0	homalt	80.0000	66.6667	100.0000	84.6154	2	1	2	0	0
ltrigg-rtg2	INDEL	I16_PLUS	map_l150_m2_e0	homalt	80.0000	66.6667	100.0000	87.5000	2	1	2	0	0
ltrigg-rtg2	INDEL	I16_PLUS	map_l150_m2_e1	homalt	80.0000	66.6667	100.0000	87.5000	2	1	2	0	0
ltrigg-rtg2	INDEL	I16_PLUS	tech_badpromoters	het	100.0000	100.0000	100.0000	50.0000	2	0	2	0	0
ltrigg-rtg2	INDEL	I16_PLUS	tech_badpromoters	homalt	100.0000	100.0000	100.0000	50.0000	2	0	2	0	0
ltrigg-rtg2	INDEL	I1_5	func_cds	hetalt	100.0000	100.0000	100.0000	75.0000	2	0	2	0	0
ltrigg-rtg2	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_51to200	homalt	100.0000	100.0000	100.0000	96.0000	1	0	2	0	0
ltrigg-rtg2	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_51to200	het	80.0000	100.0000	66.6667	85.0000	2	0	2	1	0	0.0000
ltrigg-rtg2	INDEL	I1_5	map_l250_m1_e0	hetalt	100.0000	100.0000	100.0000	98.9011	2	0	2	0	0
ltrigg-rtg2	INDEL	I1_5	map_l250_m2_e0	hetalt	100.0000	100.0000	100.0000	99.0868	2	0	2	0	0
ltrigg-rtg2	INDEL	I1_5	map_l250_m2_e1	hetalt	100.0000	100.0000	100.0000	99.0991	2	0	2	0	0
ltrigg-rtg2	INDEL	I6_15	lowcmp_SimpleRepeat_homopolymer_gt10	*	100.0000	100.0000	100.0000	99.8529	2	0	2	0	0
ltrigg-rtg2	INDEL	I6_15	lowcmp_SimpleRepeat_homopolymer_gt10	hetalt	100.0000	100.0000	100.0000	99.6721	2	0	2	0	0
ltrigg-rtg2	INDEL	I6_15	map_l150_m0_e0	het	66.6667	50.0000	100.0000	95.7447	2	2	2	0	0
ltrigg-rtg2	INDEL	I6_15	map_l250_m1_e0	het	66.6667	50.0000	100.0000	96.5517	2	2	2	0	0
ltrigg-rtg2	SNP	*	map_l250_m1_e0	hetalt	66.6667	50.0000	100.0000	88.8889	2	2	2	0	0
asubramanian-gatk	INDEL	D16_PLUS	map_l125_m0_e0	homalt	100.0000	100.0000	100.0000	97.8947	2	0	2	0	0
asubramanian-gatk	INDEL	D16_PLUS	map_l125_m1_e0	hetalt	80.0000	66.6667	100.0000	95.2381	2	1	2	0	0
asubramanian-gatk	INDEL	D16_PLUS	map_l125_m2_e0	hetalt	80.0000	66.6667	100.0000	95.4545	2	1	2	0	0
asubramanian-gatk	INDEL	D16_PLUS	map_l125_m2_e1	hetalt	66.6667	50.0000	100.0000	95.4545	2	2	2	0	0
asubramanian-gatk	INDEL	D16_PLUS	map_l250_m1_e0	*	57.1429	50.0000	66.6667	98.9761	2	2	2	1	0	0.0000
asubramanian-gatk	INDEL	D16_PLUS	map_l250_m1_e0	het	66.6667	66.6667	66.6667	98.6425	2	1	2	1	0	0.0000
asubramanian-gatk	INDEL	D16_PLUS	map_l250_m2_e0	het	66.6667	66.6667	66.6667	98.8930	2	1	2	1	0	0.0000
asubramanian-gatk	INDEL	D16_PLUS	map_l250_m2_e1	het	66.6667	66.6667	66.6667	98.9091	2	1	2	1	0	0.0000
asubramanian-gatk	INDEL	D1_5	decoy	het	100.0000	100.0000	100.0000	99.9759	2	0	2	0	0
asubramanian-gatk	INDEL	D1_5	lowcmp_AllRepeats_gt200bp_gt95identity_merged	homalt	100.0000	100.0000	100.0000	99.3421	2	0	2	0	0
asubramanian-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged	homalt	100.0000	100.0000	100.0000	99.3197	2	0	2	0	0
asubramanian-gatk	INDEL	D1_5	map_l150_m0_e0	hetalt	100.0000	100.0000	100.0000	98.1818	2	0	2	0	0
asubramanian-gatk	INDEL	D1_5	tech_badpromoters	hetalt	100.0000	100.0000	100.0000	0.0000	2	0	2	0	0

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge