PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TP Query FPFP gt% FP ma
49901-49950 / 86044 show all
jli-customSNP*map_l100_m2_e0hetalt
98.8235
100.0000
97.6744
75.2874
4204211
100.0000
jli-customSNPtvmap_l100_m2_e0hetalt
98.8235
100.0000
97.6744
75.2874
4204211
100.0000
jmaeng-gatkINDEL*lowcmp_SimpleRepeat_triTR_51to200het
90.6475
90.0000
91.3043
86.0606
4554242
50.0000
jmaeng-gatkINDELI1_5map_l100_m2_e1hetalt
96.5517
93.3333
100.0000
89.6296
4234200
jmaeng-gatkINDELI6_15func_cds*
97.6744
97.6744
97.6744
41.8919
4214210
0.0000
ltrigg-rtg1INDELC6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
0.0000
0.0000
100.0000
95.4397
004200
ltrigg-rtg1INDELD16_PLUSlowcmp_SimpleRepeat_triTR_51to200*
94.3820
91.3043
97.6744
49.4118
4244211
100.0000
ltrigg-rtg1INDELD1_5map_l100_m2_e1hetalt
90.3226
82.3529
100.0000
93.2039
4294200
ltrigg-rtg1INDELD1_5map_l250_m0_e0*
94.2529
89.1304
100.0000
95.2596
4154200
ltrigg-rtg1INDELD6_15func_cds*
98.8235
97.6744
100.0000
46.8354
4214200
ltrigg-rtg1INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
71.6216
4304200
ltrigg-rtg1INDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
92.9293
86.7925
100.0000
60.7477
4674200
ltrigg-rtg1INDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
78.8448
66.1017
97.6744
72.7848
39204211
100.0000
ltrigg-rtg1INDELI16_PLUSsegdup*
94.3820
89.3617
100.0000
89.7311
4254200
jpowers-varprowlINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
78.5047
79.2453
77.7778
68.2353
4211421212
100.0000
jpowers-varprowlINDELI1_5map_l250_m2_e1homalt
94.3820
91.3043
97.6744
93.2390
4244211
100.0000
jpowers-varprowlINDELI6_15map_l100_m2_e0het
71.7949
68.8525
75.0000
88.1104
4219421414
100.0000
jpowers-varprowlINDELI6_15map_l100_m2_e1het
71.7949
68.8525
75.0000
88.3090
4219421414
100.0000
jpowers-varprowlSNPtitech_badpromotershet
94.3820
95.4545
93.3333
56.7308
4224230
0.0000
ltrigg-rtg1INDELI1_5map_l100_m1_e0hetalt
92.9362
88.6364
97.6744
92.8808
3954211
100.0000
ltrigg-rtg1INDELI1_5map_l100_m2_e0hetalt
92.9362
88.6364
97.6744
93.3846
3954211
100.0000
ltrigg-rtg1INDELI6_15func_cds*
98.8235
97.6744
100.0000
31.1475
4214200
ltrigg-rtg1INDELI6_15lowcmp_SimpleRepeat_homopolymer_6to10hetalt
97.6744
95.4545
100.0000
76.7956
4224200
ltrigg-rtg1SNP*map_l100_m2_e0hetalt
100.0000
100.0000
100.0000
65.8537
4204200
ltrigg-rtg1SNPtvmap_l100_m2_e0hetalt
100.0000
100.0000
100.0000
65.8537
4204200
jli-customINDELD6_15func_cds*
98.8235
97.6744
100.0000
52.8090
4214200
jli-customINDELI16_PLUSmap_sirenhet
91.3043
85.7143
97.6744
87.6791
4274210
0.0000
jli-customINDELI1_5map_l100_m2_e1hetalt
96.5517
93.3333
100.0000
89.6552
4234200
jmaeng-gatkSNPtitech_badpromotershet
97.6744
95.4545
100.0000
48.7805
4224200
jpowers-varprowlINDELD16_PLUSlowcmp_SimpleRepeat_homopolymer_gt10*
68.8525
61.7647
77.7778
97.8947
4226421211
91.6667
astatham-gatkINDELD16_PLUSlowcmp_SimpleRepeat_homopolymer_gt10het
92.3077
95.4545
89.3617
96.6284
4224250
0.0000
astatham-gatkINDELD16_PLUSlowcmp_SimpleRepeat_triTR_51to200*
93.3333
91.3043
95.4545
68.1159
4244222
100.0000
astatham-gatkINDELD16_PLUSmap_l100_m1_e0het
86.6603
93.4783
80.7692
95.8031
43342104
40.0000
astatham-gatkINDELI1_5map_l100_m1_e0hetalt
97.6744
95.4545
100.0000
88.5246
4224200
astatham-gatkINDELI1_5map_l100_m2_e0hetalt
97.6744
95.4545
100.0000
89.4207
4224200
astatham-gatkINDELI6_15func_cds*
97.6744
97.6744
97.6744
38.5714
4214211
100.0000
astatham-gatkINDELI6_15lowcmp_SimpleRepeat_homopolymer_6to10hetalt
97.6744
95.4545
100.0000
75.4386
4224200
bgallagher-sentieonINDELD16_PLUSlowcmp_SimpleRepeat_homopolymer_gt10het
95.4545
95.4545
95.4545
96.8162
4224220
0.0000
anovak-vgINDEL*map_l250_m0_e0het
64.3289
71.6981
58.3333
98.2533
3815423012
40.0000
anovak-vgINDELD6_15segduphomalt
85.5227
82.0000
89.3617
91.4234
4194253
60.0000
anovak-vgINDELI1_5map_l250_m2_e0homalt
68.7117
88.8889
56.0000
95.0723
405423330
90.9091
astatham-gatkSNP*map_l100_m2_e1hetalt
98.8235
97.6744
100.0000
71.8121
4214200
astatham-gatkSNPtitech_badpromotershet
97.6744
95.4545
100.0000
48.1481
4224200
astatham-gatkSNPtvmap_l100_m2_e1hetalt
98.8235
97.6744
100.0000
71.8121
4214200
asubramanian-gatkINDELD16_PLUSlowcmp_SimpleRepeat_triTR_51to200*
93.3333
91.3043
95.4545
67.8832
4244222
100.0000
asubramanian-gatkINDELD1_5map_l250_m0_e0*
83.1683
91.3043
76.3636
97.8209
42442130
0.0000
asubramanian-gatkINDELD6_15func_cds*
98.8235
97.6744
100.0000
56.7010
4214200
asubramanian-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
97.6744
97.6744
97.6744
77.7202
4214211
100.0000
asubramanian-gatkINDELI16_PLUSlowcmp_SimpleRepeat_quadTR_51to200*
93.8776
88.4615
100.0000
85.6655
2334200
asubramanian-gatkINDELI16_PLUSlowcmp_SimpleRepeat_triTR_11to50*
95.7746
91.8919
100.0000
79.0000
3434200