PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
49901-49950 / 86044 show all | |||||||||||||||
| jli-custom | SNP | * | map_l100_m2_e0 | hetalt | 98.8235 | 100.0000 | 97.6744 | 75.2874 | 42 | 0 | 42 | 1 | 1 | 100.0000 | |
| jli-custom | SNP | tv | map_l100_m2_e0 | hetalt | 98.8235 | 100.0000 | 97.6744 | 75.2874 | 42 | 0 | 42 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 90.6475 | 90.0000 | 91.3043 | 86.0606 | 45 | 5 | 42 | 4 | 2 | 50.0000 | |
| jmaeng-gatk | INDEL | I1_5 | map_l100_m2_e1 | hetalt | 96.5517 | 93.3333 | 100.0000 | 89.6296 | 42 | 3 | 42 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I6_15 | func_cds | * | 97.6744 | 97.6744 | 97.6744 | 41.8919 | 42 | 1 | 42 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 100.0000 | 95.4397 | 0 | 0 | 42 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 94.3820 | 91.3043 | 97.6744 | 49.4118 | 42 | 4 | 42 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | map_l100_m2_e1 | hetalt | 90.3226 | 82.3529 | 100.0000 | 93.2039 | 42 | 9 | 42 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D1_5 | map_l250_m0_e0 | * | 94.2529 | 89.1304 | 100.0000 | 95.2596 | 41 | 5 | 42 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D6_15 | func_cds | * | 98.8235 | 97.6744 | 100.0000 | 46.8354 | 42 | 1 | 42 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 71.6216 | 43 | 0 | 42 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 92.9293 | 86.7925 | 100.0000 | 60.7477 | 46 | 7 | 42 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 78.8448 | 66.1017 | 97.6744 | 72.7848 | 39 | 20 | 42 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | segdup | * | 94.3820 | 89.3617 | 100.0000 | 89.7311 | 42 | 5 | 42 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 78.5047 | 79.2453 | 77.7778 | 68.2353 | 42 | 11 | 42 | 12 | 12 | 100.0000 | |
| jpowers-varprowl | INDEL | I1_5 | map_l250_m2_e1 | homalt | 94.3820 | 91.3043 | 97.6744 | 93.2390 | 42 | 4 | 42 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l100_m2_e0 | het | 71.7949 | 68.8525 | 75.0000 | 88.1104 | 42 | 19 | 42 | 14 | 14 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l100_m2_e1 | het | 71.7949 | 68.8525 | 75.0000 | 88.3090 | 42 | 19 | 42 | 14 | 14 | 100.0000 | |
| jpowers-varprowl | SNP | ti | tech_badpromoters | het | 94.3820 | 95.4545 | 93.3333 | 56.7308 | 42 | 2 | 42 | 3 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l100_m1_e0 | hetalt | 92.9362 | 88.6364 | 97.6744 | 92.8808 | 39 | 5 | 42 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l100_m2_e0 | hetalt | 92.9362 | 88.6364 | 97.6744 | 93.3846 | 39 | 5 | 42 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | func_cds | * | 98.8235 | 97.6744 | 100.0000 | 31.1475 | 42 | 1 | 42 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 97.6744 | 95.4545 | 100.0000 | 76.7956 | 42 | 2 | 42 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | * | map_l100_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 65.8537 | 42 | 0 | 42 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | tv | map_l100_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 65.8537 | 42 | 0 | 42 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | func_cds | * | 98.8235 | 97.6744 | 100.0000 | 52.8090 | 42 | 1 | 42 | 0 | 0 | ||
| jli-custom | INDEL | I16_PLUS | map_siren | het | 91.3043 | 85.7143 | 97.6744 | 87.6791 | 42 | 7 | 42 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | I1_5 | map_l100_m2_e1 | hetalt | 96.5517 | 93.3333 | 100.0000 | 89.6552 | 42 | 3 | 42 | 0 | 0 | ||
| jmaeng-gatk | SNP | ti | tech_badpromoters | het | 97.6744 | 95.4545 | 100.0000 | 48.7805 | 42 | 2 | 42 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 68.8525 | 61.7647 | 77.7778 | 97.8947 | 42 | 26 | 42 | 12 | 11 | 91.6667 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 92.3077 | 95.4545 | 89.3617 | 96.6284 | 42 | 2 | 42 | 5 | 0 | 0.0000 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 93.3333 | 91.3043 | 95.4545 | 68.1159 | 42 | 4 | 42 | 2 | 2 | 100.0000 | |
| astatham-gatk | INDEL | D16_PLUS | map_l100_m1_e0 | het | 86.6603 | 93.4783 | 80.7692 | 95.8031 | 43 | 3 | 42 | 10 | 4 | 40.0000 | |
| astatham-gatk | INDEL | I1_5 | map_l100_m1_e0 | hetalt | 97.6744 | 95.4545 | 100.0000 | 88.5246 | 42 | 2 | 42 | 0 | 0 | ||
| astatham-gatk | INDEL | I1_5 | map_l100_m2_e0 | hetalt | 97.6744 | 95.4545 | 100.0000 | 89.4207 | 42 | 2 | 42 | 0 | 0 | ||
| astatham-gatk | INDEL | I6_15 | func_cds | * | 97.6744 | 97.6744 | 97.6744 | 38.5714 | 42 | 1 | 42 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 97.6744 | 95.4545 | 100.0000 | 75.4386 | 42 | 2 | 42 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 95.4545 | 95.4545 | 95.4545 | 96.8162 | 42 | 2 | 42 | 2 | 0 | 0.0000 | |
| anovak-vg | INDEL | * | map_l250_m0_e0 | het | 64.3289 | 71.6981 | 58.3333 | 98.2533 | 38 | 15 | 42 | 30 | 12 | 40.0000 | |
| anovak-vg | INDEL | D6_15 | segdup | homalt | 85.5227 | 82.0000 | 89.3617 | 91.4234 | 41 | 9 | 42 | 5 | 3 | 60.0000 | |
| anovak-vg | INDEL | I1_5 | map_l250_m2_e0 | homalt | 68.7117 | 88.8889 | 56.0000 | 95.0723 | 40 | 5 | 42 | 33 | 30 | 90.9091 | |
| astatham-gatk | SNP | * | map_l100_m2_e1 | hetalt | 98.8235 | 97.6744 | 100.0000 | 71.8121 | 42 | 1 | 42 | 0 | 0 | ||
| astatham-gatk | SNP | ti | tech_badpromoters | het | 97.6744 | 95.4545 | 100.0000 | 48.1481 | 42 | 2 | 42 | 0 | 0 | ||
| astatham-gatk | SNP | tv | map_l100_m2_e1 | hetalt | 98.8235 | 97.6744 | 100.0000 | 71.8121 | 42 | 1 | 42 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 93.3333 | 91.3043 | 95.4545 | 67.8832 | 42 | 4 | 42 | 2 | 2 | 100.0000 | |
| asubramanian-gatk | INDEL | D1_5 | map_l250_m0_e0 | * | 83.1683 | 91.3043 | 76.3636 | 97.8209 | 42 | 4 | 42 | 13 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | D6_15 | func_cds | * | 98.8235 | 97.6744 | 100.0000 | 56.7010 | 42 | 1 | 42 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 97.6744 | 97.6744 | 97.6744 | 77.7202 | 42 | 1 | 42 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 93.8776 | 88.4615 | 100.0000 | 85.6655 | 23 | 3 | 42 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 95.7746 | 91.8919 | 100.0000 | 79.0000 | 34 | 3 | 42 | 0 | 0 | ||