PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
49401-49450 / 86044 show all | |||||||||||||||
| astatham-gatk | INDEL | * | map_l125_m1_e0 | hetalt | 97.4359 | 95.0000 | 100.0000 | 92.4901 | 38 | 2 | 38 | 0 | 0 | ||
| astatham-gatk | INDEL | * | tech_badpromoters | het | 98.7013 | 97.4359 | 100.0000 | 53.6585 | 38 | 1 | 38 | 0 | 0 | ||
| astatham-gatk | SNP | tv | tech_badpromoters | homalt | 97.4359 | 97.4359 | 97.4359 | 51.8519 | 38 | 1 | 38 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | * | tech_badpromoters | het | 98.7013 | 97.4359 | 100.0000 | 53.6585 | 38 | 1 | 38 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 100.0000 | 100.0000 | 100.0000 | 78.8889 | 37 | 0 | 38 | 0 | 0 | ||
| bgallagher-sentieon | SNP | tv | tech_badpromoters | homalt | 97.4359 | 97.4359 | 97.4359 | 51.8519 | 38 | 1 | 38 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 92.6829 | 90.4762 | 95.0000 | 99.3670 | 38 | 4 | 38 | 2 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 100.0000 | 100.0000 | 100.0000 | 78.8889 | 37 | 0 | 38 | 0 | 0 | ||
| asubramanian-gatk | SNP | tv | tech_badpromoters | homalt | 97.4359 | 97.4359 | 97.4359 | 51.2500 | 38 | 1 | 38 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | INDEL | * | map_l125_m1_e0 | hetalt | 97.4359 | 95.0000 | 100.0000 | 91.8455 | 38 | 2 | 38 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | * | tech_badpromoters | het | 98.7013 | 97.4359 | 100.0000 | 52.5000 | 38 | 1 | 38 | 0 | 0 | ||
| ciseli-custom | INDEL | D16_PLUS | segdup | * | 70.3704 | 65.5172 | 76.0000 | 92.2118 | 38 | 20 | 38 | 12 | 9 | 75.0000 | |
| ciseli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 63.1287 | 83.7209 | 50.6667 | 72.8261 | 36 | 7 | 38 | 37 | 25 | 67.5676 | |
| ciseli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 44.9704 | 31.1475 | 80.8511 | 62.9921 | 38 | 84 | 38 | 9 | 6 | 66.6667 | |
| ciseli-custom | INDEL | I6_15 | segdup | het | 58.0153 | 45.7831 | 79.1667 | 89.8520 | 38 | 45 | 38 | 10 | 9 | 90.0000 | |
| ckim-dragen | SNP | tv | tech_badpromoters | homalt | 97.4359 | 97.4359 | 97.4359 | 51.2500 | 38 | 1 | 38 | 1 | 1 | 100.0000 | |
| ckim-gatk | INDEL | * | tech_badpromoters | het | 98.7013 | 97.4359 | 100.0000 | 53.0864 | 38 | 1 | 38 | 0 | 0 | ||
| ckim-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 100.0000 | 100.0000 | 100.0000 | 79.7872 | 37 | 0 | 38 | 0 | 0 | ||
| ckim-gatk | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 95.0000 | 90.4762 | 100.0000 | 97.4342 | 38 | 4 | 38 | 0 | 0 | ||
| ckim-gatk | SNP | tv | tech_badpromoters | homalt | 97.4359 | 97.4359 | 97.4359 | 51.8519 | 38 | 1 | 38 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 89.4118 | 80.8511 | 100.0000 | 30.9091 | 38 | 9 | 38 | 0 | 0 | ||
| ciseli-custom | SNP | ti | tech_badpromoters | homalt | 95.0609 | 95.1220 | 95.0000 | 49.3671 | 39 | 2 | 38 | 2 | 1 | 50.0000 | |
| ciseli-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 51.3139 | 90.2439 | 35.8491 | 90.7906 | 37 | 4 | 38 | 68 | 7 | 10.2941 | |
| ckim-dragen | INDEL | * | tech_badpromoters | het | 98.7013 | 97.4359 | 100.0000 | 49.3333 | 38 | 1 | 38 | 0 | 0 | ||
| ckim-dragen | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 95.0000 | 90.4762 | 100.0000 | 99.3499 | 38 | 4 | 38 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 100.0000 | 100.0000 | 100.0000 | 81.8182 | 37 | 0 | 38 | 0 | 0 | ||
| ckim-dragen | INDEL | D6_15 | map_l150_m1_e0 | het | 97.5000 | 100.0000 | 95.1220 | 93.8806 | 39 | 0 | 39 | 2 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 92.8571 | 92.8571 | 92.8571 | 99.3463 | 39 | 3 | 39 | 3 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D6_15 | map_l150_m1_e0 | het | 95.1220 | 100.0000 | 90.6977 | 95.4974 | 39 | 0 | 39 | 4 | 0 | 0.0000 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 73.3791 | 60.6557 | 92.8571 | 56.2500 | 37 | 24 | 39 | 3 | 3 | 100.0000 | |
| ciseli-custom | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 45.6140 | 82.9787 | 31.4516 | 52.4904 | 39 | 8 | 39 | 85 | 76 | 89.4118 | |
| ciseli-custom | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 16.6796 | 78.5714 | 9.3301 | 83.9601 | 33 | 9 | 39 | 379 | 6 | 1.5831 | |
| eyeh-varpipe | INDEL | I6_15 | map_l125_m2_e1 | het | 72.5049 | 63.3333 | 84.7826 | 83.5125 | 19 | 11 | 39 | 7 | 5 | 71.4286 | |
| eyeh-varpipe | SNP | tv | map_l125_m0_e0 | hetalt | 98.7342 | 100.0000 | 97.5000 | 78.2609 | 9 | 0 | 39 | 1 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | * | map_l100_m2_e1 | hetalt | 73.5849 | 59.0909 | 97.5000 | 93.2660 | 78 | 54 | 39 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 81.1166 | 86.3636 | 76.4706 | 96.8460 | 38 | 6 | 39 | 12 | 11 | 91.6667 | |
| gduggal-bwavard | INDEL | D6_15 | map_l150_m1_e0 | het | 84.7826 | 100.0000 | 73.5849 | 94.5697 | 39 | 0 | 39 | 14 | 10 | 71.4286 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 78.7879 | 65.0000 | 100.0000 | 89.2265 | 39 | 21 | 39 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 47.2727 | 31.9672 | 90.6977 | 87.2024 | 39 | 83 | 39 | 4 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | I6_15 | map_l100_m2_e0 | het | 78.0000 | 63.9344 | 100.0000 | 94.7651 | 39 | 22 | 39 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | map_l100_m2_e1 | het | 78.0000 | 63.9344 | 100.0000 | 94.8752 | 39 | 22 | 39 | 0 | 0 | ||
| gduggal-bwaplat | SNP | ti | tech_badpromoters | het | 92.8571 | 88.6364 | 97.5000 | 65.2174 | 39 | 5 | 39 | 1 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | I6_15 | map_l125_m1_e0 | * | 83.8710 | 73.5849 | 97.5000 | 86.4865 | 39 | 14 | 39 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | map_l125_m2_e0 | * | 83.8710 | 73.5849 | 97.5000 | 88.4058 | 39 | 14 | 39 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | map_l125_m2_e1 | * | 83.8710 | 73.5849 | 97.5000 | 88.7955 | 39 | 14 | 39 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 91.7647 | 95.1220 | 88.6364 | 91.7448 | 39 | 2 | 39 | 5 | 4 | 80.0000 | |
| gduggal-bwafb | SNP | tv | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 57.6087 | 39 | 0 | 39 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | map_l250_m1_e0 | homalt | 52.7027 | 35.7798 | 100.0000 | 97.9835 | 39 | 70 | 39 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D1_5 | segdup | hetalt | 86.9565 | 76.9231 | 100.0000 | 97.6449 | 40 | 12 | 39 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I6_15 | map_l125_m1_e0 | * | 72.2222 | 73.5849 | 70.9091 | 89.9818 | 39 | 14 | 39 | 16 | 8 | 50.0000 | |