PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
49151-49200 / 86044 show all | |||||||||||||||
| hfeng-pmm3 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 98.6301 | 100.0000 | 97.2973 | 69.4215 | 36 | 0 | 36 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 92.3077 | 87.8049 | 97.2973 | 93.3573 | 36 | 5 | 36 | 1 | 1 | 100.0000 | |
| jlack-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 96.0000 | 100.0000 | 92.3077 | 68.5484 | 36 | 0 | 36 | 3 | 3 | 100.0000 | |
| jlack-gatk | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 93.5065 | 87.8049 | 100.0000 | 92.8713 | 36 | 5 | 36 | 0 | 0 | ||
| jli-custom | INDEL | * | map_l125_m1_e0 | hetalt | 94.7368 | 90.0000 | 100.0000 | 92.6078 | 36 | 4 | 36 | 0 | 0 | ||
| jli-custom | INDEL | * | tech_badpromoters | het | 96.0000 | 92.3077 | 100.0000 | 51.3514 | 36 | 3 | 36 | 0 | 0 | ||
| ckim-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 96.0000 | 92.3077 | 100.0000 | 56.6265 | 36 | 3 | 36 | 0 | 0 | ||
| ckim-gatk | INDEL | D6_15 | map_l125_m2_e1 | homalt | 98.6301 | 97.2973 | 100.0000 | 89.5652 | 36 | 1 | 36 | 0 | 0 | ||
| cchapple-custom | INDEL | C1_5 | map_l100_m1_e0 | * | 0.0000 | 0.0000 | 67.9245 | 95.0188 | 0 | 0 | 36 | 17 | 8 | 47.0588 | |
| cchapple-custom | INDEL | C1_5 | map_l100_m2_e0 | * | 0.0000 | 0.0000 | 65.4545 | 95.2132 | 0 | 0 | 36 | 19 | 9 | 47.3684 | |
| cchapple-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 0.0000 | 0.0000 | 80.0000 | 97.0000 | 0 | 0 | 36 | 9 | 3 | 33.3333 | |
| cchapple-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 98.6301 | 100.0000 | 97.2973 | 68.1034 | 36 | 0 | 36 | 1 | 1 | 100.0000 | |
| cchapple-custom | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 93.6380 | 90.2439 | 97.2973 | 85.9316 | 37 | 4 | 36 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 0.0000 | 0.0000 | 23.6842 | 94.8614 | 0 | 0 | 36 | 116 | 40 | 34.4828 | |
| ciseli-custom | INDEL | D6_15 | func_cds | * | 84.7059 | 83.7209 | 85.7143 | 51.7241 | 36 | 7 | 36 | 6 | 2 | 33.3333 | |
| ckim-dragen | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 97.2973 | 97.2973 | 97.2973 | 87.1972 | 36 | 1 | 36 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 96.0000 | 92.3077 | 100.0000 | 56.6265 | 36 | 3 | 36 | 0 | 0 | ||
| ckim-dragen | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 97.2973 | 97.2973 | 97.2973 | 61.4583 | 36 | 1 | 36 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 96.9697 | 94.1176 | 100.0000 | 94.2400 | 48 | 3 | 36 | 0 | 0 | ||
| ckim-dragen | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 98.6301 | 100.0000 | 97.2973 | 70.8661 | 36 | 0 | 36 | 1 | 1 | 100.0000 | |
| ckim-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 96.0000 | 100.0000 | 92.3077 | 69.5312 | 36 | 0 | 36 | 3 | 3 | 100.0000 | |
| ckim-gatk | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 93.5065 | 87.8049 | 100.0000 | 93.1818 | 36 | 5 | 36 | 0 | 0 | ||
| gduggal-snapplat | INDEL | I1_5 | map_l250_m2_e1 | homalt | 85.3948 | 76.0870 | 97.2973 | 97.5067 | 35 | 11 | 36 | 1 | 0 | 0.0000 | |
| gduggal-snapplat | SNP | * | map_l100_m1_e0 | hetalt | 84.7059 | 87.8049 | 81.8182 | 83.2700 | 36 | 5 | 36 | 8 | 8 | 100.0000 | |
| gduggal-snapvard | INDEL | I6_15 | map_l150_m2_e0 | het | 64.5327 | 93.3333 | 49.3151 | 88.3013 | 14 | 1 | 36 | 37 | 29 | 78.3784 | |
| gduggal-snapplat | SNP | tv | map_l100_m1_e0 | hetalt | 84.7059 | 87.8049 | 81.8182 | 83.2700 | 36 | 5 | 36 | 8 | 8 | 100.0000 | |
| gduggal-snapvard | INDEL | * | map_l250_m0_e0 | homalt | 91.3043 | 84.0000 | 100.0000 | 96.4427 | 21 | 4 | 36 | 0 | 0 | ||
| gduggal-snapvard | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 0.0000 | 0.0000 | 20.1117 | 86.6018 | 0 | 0 | 36 | 143 | 8 | 5.5944 | |
| gduggal-snapvard | INDEL | C1_5 | map_siren | homalt | 0.0000 | 0.0000 | 94.7368 | 94.0718 | 0 | 0 | 36 | 2 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | C6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 0.0000 | 0.0000 | 31.5789 | 81.2500 | 0 | 0 | 36 | 78 | 13 | 16.6667 | |
| gduggal-snapplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 39.0387 | 28.0303 | 64.2857 | 93.0175 | 37 | 95 | 36 | 20 | 6 | 30.0000 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 54.9618 | 39.1304 | 92.3077 | 70.6767 | 36 | 56 | 36 | 3 | 3 | 100.0000 | |
| ghariani-varprowl | INDEL | D6_15 | func_cds | * | 86.7470 | 83.7209 | 90.0000 | 58.3333 | 36 | 7 | 36 | 4 | 4 | 100.0000 | |
| ghariani-varprowl | INDEL | I6_15 | func_cds | * | 83.7209 | 83.7209 | 83.7209 | 37.6812 | 36 | 7 | 36 | 7 | 7 | 100.0000 | |
| ghariani-varprowl | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 69.2308 | 61.0169 | 80.0000 | 61.2069 | 36 | 23 | 36 | 9 | 8 | 88.8889 | |
| ghariani-varprowl | INDEL | D6_15 | map_l125_m0_e0 | * | 80.4348 | 78.7234 | 82.2222 | 94.5189 | 37 | 10 | 37 | 8 | 8 | 100.0000 | |
| ghariani-varprowl | INDEL | I16_PLUS | segdup | * | 81.9440 | 76.5957 | 88.0952 | 93.0116 | 36 | 11 | 37 | 5 | 5 | 100.0000 | |
| gduggal-snapplat | SNP | ti | tech_badpromoters | homalt | 94.8718 | 90.2439 | 100.0000 | 44.7761 | 37 | 4 | 37 | 0 | 0 | ||
| gduggal-snapplat | SNP | tv | map_l100_m2_e0 | hetalt | 85.0575 | 88.0952 | 82.2222 | 85.0993 | 37 | 5 | 37 | 8 | 8 | 100.0000 | |
| gduggal-snapvard | INDEL | C1_5 | map_l125_m2_e0 | het | 0.0000 | 0.0000 | 37.7551 | 96.0098 | 0 | 0 | 37 | 61 | 6 | 9.8361 | |
| gduggal-snapvard | INDEL | C1_5 | map_l125_m2_e1 | het | 0.0000 | 0.0000 | 37.7551 | 96.0863 | 0 | 0 | 37 | 61 | 6 | 9.8361 | |
| gduggal-snapplat | INDEL | I6_15 | HG002compoundhet | het | 14.0448 | 16.8269 | 12.0521 | 71.7051 | 35 | 173 | 37 | 270 | 38 | 14.0741 | |
| gduggal-snapplat | SNP | * | map_l100_m2_e0 | hetalt | 85.0575 | 88.0952 | 82.2222 | 85.0993 | 37 | 5 | 37 | 8 | 8 | 100.0000 | |
| gduggal-snapvard | INDEL | I6_15 | map_l150_m2_e1 | het | 65.2174 | 93.7500 | 50.0000 | 88.5093 | 15 | 1 | 37 | 37 | 29 | 78.3784 | |
| ghariani-varprowl | INDEL | * | tech_badpromoters | het | 81.3187 | 94.8718 | 71.1538 | 54.3860 | 37 | 2 | 37 | 15 | 15 | 100.0000 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 39.3617 | 24.5033 | 100.0000 | 15.9091 | 37 | 114 | 37 | 0 | 0 | ||
| gduggal-bwavard | INDEL | C1_5 | map_l100_m2_e1 | het | 0.0000 | 0.0000 | 46.8354 | 95.6807 | 0 | 0 | 37 | 42 | 4 | 9.5238 | |
| gduggal-bwavard | INDEL | D16_PLUS | segdup | het | 84.0644 | 97.2973 | 74.0000 | 96.3530 | 36 | 1 | 37 | 13 | 6 | 46.1538 | |
| gduggal-bwavard | INDEL | D6_15 | func_cds | * | 89.1566 | 86.0465 | 92.5000 | 58.7629 | 37 | 6 | 37 | 3 | 3 | 100.0000 | |
| gduggal-bwavard | INDEL | D6_15 | map_l125_m0_e0 | * | 76.2887 | 78.7234 | 74.0000 | 94.1725 | 37 | 10 | 37 | 13 | 8 | 61.5385 | |