PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
48851-48900 / 86044 show all | |||||||||||||||
| ltrigg-rtg1 | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | * | 92.3981 | 88.0952 | 97.1429 | 87.9310 | 37 | 5 | 34 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 0.0000 | 0.0000 | 89.4737 | 96.2891 | 0 | 0 | 34 | 4 | 3 | 75.0000 | |
| ltrigg-rtg2 | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 0.0000 | 0.0000 | 89.4737 | 96.2891 | 0 | 0 | 34 | 4 | 3 | 75.0000 | |
| ltrigg-rtg2 | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 0.0000 | 0.0000 | 75.5556 | 93.5065 | 0 | 1 | 34 | 11 | 0 | 0.0000 | |
| jli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 88.3117 | 80.9524 | 97.1429 | 99.2233 | 34 | 8 | 34 | 1 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 83.6066 | 75.0000 | 94.4444 | 59.5506 | 6 | 2 | 34 | 2 | 2 | 100.0000 | |
| cchapple-custom | INDEL | D6_15 | map_l125_m2_e1 | homalt | 93.1507 | 91.8919 | 94.4444 | 85.1852 | 34 | 3 | 34 | 2 | 2 | 100.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l125_m2_e0 | homalt | 95.7746 | 94.4444 | 97.1429 | 91.1392 | 34 | 2 | 34 | 1 | 1 | 100.0000 | |
| ckim-dragen | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | het | 94.4444 | 94.4444 | 94.4444 | 89.0578 | 34 | 2 | 34 | 2 | 0 | 0.0000 | |
| ckim-gatk | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | het | 95.7746 | 94.4444 | 97.1429 | 88.4488 | 34 | 2 | 34 | 1 | 0 | 0.0000 | |
| ciseli-custom | INDEL | D16_PLUS | map_l100_m2_e1 | * | 43.8881 | 34.0206 | 61.8182 | 89.1304 | 33 | 64 | 34 | 21 | 15 | 71.4286 | |
| ciseli-custom | INDEL | D6_15 | map_l100_m0_e0 | het | 58.7127 | 55.0000 | 62.9630 | 92.9412 | 33 | 27 | 34 | 20 | 4 | 20.0000 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 32.8326 | 22.5000 | 60.7143 | 91.1532 | 36 | 124 | 34 | 22 | 12 | 54.5455 | |
| ciseli-custom | INDEL | I1_5 | map_l250_m1_e0 | het | 53.5433 | 56.6667 | 50.7463 | 97.1158 | 34 | 26 | 34 | 33 | 26 | 78.7879 | |
| gduggal-bwaplat | INDEL | I6_15 | func_cds | * | 87.1795 | 79.0698 | 97.1429 | 43.5484 | 34 | 9 | 34 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 49.2754 | 33.3333 | 94.4444 | 98.9263 | 34 | 68 | 34 | 2 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | C1_5 | map_l100_m2_e1 | het | 0.0000 | 0.0000 | 87.1795 | 95.5017 | 0 | 0 | 34 | 5 | 2 | 40.0000 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 0.0000 | 0.0000 | 82.9268 | 96.4777 | 0 | 0 | 34 | 7 | 4 | 57.1429 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 0.0000 | 0.0000 | 82.9268 | 96.4777 | 0 | 0 | 34 | 7 | 4 | 57.1429 | |
| eyeh-varpipe | INDEL | D1_5 | map_l100_m1_e0 | hetalt | 48.9649 | 34.0426 | 87.1795 | 93.5323 | 16 | 31 | 34 | 5 | 3 | 60.0000 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 54.6624 | 38.4615 | 94.4444 | 73.7226 | 15 | 24 | 34 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | I6_15 | map_l100_m0_e0 | het | 81.4747 | 76.4706 | 87.1795 | 78.5714 | 13 | 4 | 34 | 5 | 3 | 60.0000 | |
| eyeh-varpipe | INDEL | I6_15 | map_l125_m1_e0 | homalt | 84.4720 | 80.0000 | 89.4737 | 80.7107 | 12 | 3 | 34 | 4 | 4 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l125_m2_e0 | homalt | 95.7746 | 94.4444 | 97.1429 | 91.7258 | 34 | 2 | 34 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 53.1250 | 38.2022 | 87.1795 | 62.1359 | 34 | 55 | 34 | 5 | 5 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 54.0397 | 38.7097 | 89.4737 | 72.4638 | 108 | 171 | 34 | 4 | 4 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | map_siren | * | 54.1375 | 38.3721 | 91.8919 | 72.3881 | 33 | 53 | 34 | 3 | 3 | 100.0000 | |
| gduggal-bwavard | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 13.1543 | 7.1138 | 87.1795 | 80.6931 | 35 | 457 | 34 | 5 | 4 | 80.0000 | |
| eyeh-varpipe | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 94.4444 | 100.0000 | 89.4737 | 92.8972 | 2 | 0 | 34 | 4 | 3 | 75.0000 | |
| eyeh-varpipe | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 73.3373 | 87.8049 | 62.9630 | 84.4380 | 36 | 5 | 34 | 20 | 7 | 35.0000 | |
| gduggal-snapfb | INDEL | * | map_l100_m2_e1 | hetalt | 59.5248 | 47.7273 | 79.0698 | 93.2917 | 63 | 69 | 34 | 9 | 5 | 55.5556 | |
| gduggal-snapfb | INDEL | * | segdup | hetalt | 81.3718 | 74.6154 | 89.4737 | 97.2915 | 97 | 33 | 34 | 4 | 2 | 50.0000 | |
| hfeng-pmm2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 98.5507 | 97.1429 | 100.0000 | 85.6540 | 34 | 1 | 34 | 0 | 0 | ||
| jlack-gatk | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | het | 97.1429 | 94.4444 | 100.0000 | 88.5906 | 34 | 2 | 34 | 0 | 0 | ||
| jlack-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 61.2613 | 77.2727 | 50.7463 | 95.1868 | 34 | 10 | 34 | 33 | 3 | 9.0909 | |
| jlack-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 94.4444 | 91.8919 | 97.1429 | 87.8472 | 34 | 3 | 34 | 1 | 1 | 100.0000 | |
| jlack-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 94.4444 | 91.8919 | 97.1429 | 63.9175 | 34 | 3 | 34 | 1 | 1 | 100.0000 | |
| jlack-gatk | INDEL | D6_15 | map_l125_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 87.5458 | 34 | 0 | 34 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 93.1507 | 91.8919 | 94.4444 | 87.7551 | 34 | 3 | 34 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 94.4444 | 91.8919 | 97.1429 | 58.3333 | 34 | 3 | 34 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 97.0588 | 94.2857 | 100.0000 | 65.3061 | 33 | 2 | 34 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 98.5507 | 97.1429 | 100.0000 | 78.3439 | 34 | 1 | 34 | 0 | 0 | ||
| rpoplin-dv42 | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 88.3117 | 80.9524 | 97.1429 | 97.1797 | 34 | 8 | 34 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | segdup | het | 93.2216 | 97.2973 | 89.4737 | 95.2736 | 36 | 1 | 34 | 4 | 2 | 50.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | map_l125_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 86.7188 | 34 | 0 | 34 | 0 | 0 | ||
| ghariani-varprowl | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 78.1609 | 80.9524 | 75.5556 | 97.2477 | 34 | 8 | 34 | 11 | 2 | 18.1818 | |
| gduggal-snapvard | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 0.0000 | 0.0000 | 70.8333 | 94.2446 | 0 | 0 | 34 | 14 | 5 | 35.7143 | |
| gduggal-snapvard | INDEL | C1_5 | map_l125_m1_e0 | het | 0.0000 | 0.0000 | 36.5591 | 95.7515 | 0 | 0 | 34 | 59 | 5 | 8.4746 | |
| gduggal-snapvard | INDEL | D16_PLUS | * | homalt | 4.0460 | 2.0686 | 91.8919 | 77.7108 | 35 | 1657 | 34 | 3 | 1 | 33.3333 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 16.5989 | 10.9091 | 34.6939 | 47.3118 | 36 | 294 | 34 | 64 | 12 | 18.7500 | |