PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
48251-48300 / 86044 show all | |||||||||||||||
| jli-custom | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 92.3077 | 85.7143 | 100.0000 | 92.8741 | 30 | 5 | 30 | 0 | 0 | ||
| jli-custom | SNP | ti | map_l100_m2_e0 | hetalt | 98.3607 | 100.0000 | 96.7742 | 72.8070 | 30 | 0 | 30 | 1 | 1 | 100.0000 | |
| jli-custom | SNP | tv | map_l125_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 74.1379 | 30 | 0 | 30 | 0 | 0 | ||
| jli-custom | SNP | tv | map_l125_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 78.4173 | 30 | 0 | 30 | 0 | 0 | ||
| jli-custom | SNP | tv | map_l125_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 78.4173 | 30 | 0 | 30 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 92.1122 | 87.8788 | 96.7742 | 59.7403 | 29 | 4 | 30 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | SNP | * | map_l100_m2_e1 | hetalt | 81.0811 | 69.7674 | 96.7742 | 90.1899 | 30 | 13 | 30 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 58.2524 | 50.8475 | 68.1818 | 80.3571 | 30 | 29 | 30 | 14 | 14 | 100.0000 | |
| ltrigg-rtg1 | INDEL | * | map_l100_m0_e0 | hetalt | 90.4198 | 84.8485 | 96.7742 | 93.9216 | 28 | 5 | 30 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | C16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 93.7500 | 95.8170 | 0 | 0 | 30 | 2 | 2 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | map_l100_m1_e0 | homalt | 96.8750 | 93.9394 | 100.0000 | 82.3529 | 31 | 2 | 30 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | map_l100_m2_e0 | homalt | 96.8750 | 93.9394 | 100.0000 | 84.4560 | 31 | 2 | 30 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | map_l100_m2_e1 | homalt | 96.8750 | 93.9394 | 100.0000 | 84.7716 | 31 | 2 | 30 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | * | map_l125_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 63.4146 | 30 | 0 | 30 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | * | map_l125_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 67.3913 | 30 | 0 | 30 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | * | map_l125_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 67.3913 | 30 | 0 | 30 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | ti | map_l100_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 66.2921 | 30 | 0 | 30 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | tv | map_l125_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 63.4146 | 30 | 0 | 30 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | tv | map_l125_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 67.3913 | 30 | 0 | 30 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | tv | map_l125_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 67.3913 | 30 | 0 | 30 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | * | map_l100_m0_e0 | hetalt | 91.8033 | 84.8485 | 100.0000 | 94.2857 | 28 | 5 | 30 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | C16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 93.7500 | 95.8060 | 0 | 0 | 30 | 2 | 2 | 100.0000 | |
| astatham-gatk | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 92.3077 | 85.7143 | 100.0000 | 92.9245 | 30 | 5 | 30 | 0 | 0 | ||
| astatham-gatk | SNP | ti | map_l100_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 69.6970 | 30 | 0 | 30 | 0 | 0 | ||
| asubramanian-gatk | INDEL | * | tech_badpromoters | homalt | 95.2381 | 90.9091 | 100.0000 | 60.5263 | 30 | 3 | 30 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D1_5 | map_l250_m0_e0 | het | 80.0000 | 90.9091 | 71.4286 | 97.8582 | 30 | 3 | 30 | 12 | 0 | 0.0000 | |
| bgallagher-sentieon | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 92.3077 | 85.7143 | 100.0000 | 92.9245 | 30 | 5 | 30 | 0 | 0 | ||
| bgallagher-sentieon | SNP | ti | map_l100_m2_e1 | hetalt | 98.3607 | 96.7742 | 100.0000 | 69.6970 | 30 | 1 | 30 | 0 | 0 | ||
| anovak-vg | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 22.4849 | 18.3099 | 29.1262 | 29.9320 | 26 | 116 | 30 | 73 | 61 | 83.5616 | |
| anovak-vg | INDEL | D6_15 | map_l125_m2_e0 | homalt | 85.7143 | 83.3333 | 88.2353 | 86.8726 | 30 | 6 | 30 | 4 | 4 | 100.0000 | |
| anovak-vg | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 8.0617 | 4.6278 | 31.2500 | 60.9756 | 23 | 474 | 30 | 66 | 20 | 30.3030 | |
| anovak-vg | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 9.4937 | 5.5556 | 32.6087 | 59.8253 | 23 | 391 | 30 | 62 | 18 | 29.0323 | |
| gduggal-bwafb | INDEL | D1_5 | map_l250_m0_e0 | het | 92.3077 | 90.9091 | 93.7500 | 97.0936 | 30 | 3 | 30 | 2 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 32.0388 | 20.3704 | 75.0000 | 58.7629 | 22 | 86 | 30 | 10 | 10 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | map_l100_m1_e0 | homalt | 93.7500 | 90.9091 | 96.7742 | 81.7647 | 30 | 3 | 30 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | map_l100_m2_e0 | homalt | 93.7500 | 90.9091 | 96.7742 | 83.7696 | 30 | 3 | 30 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | map_l100_m2_e1 | homalt | 93.7500 | 90.9091 | 96.7742 | 84.1026 | 30 | 3 | 30 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 72.2892 | 71.4286 | 73.1707 | 97.3325 | 30 | 12 | 30 | 11 | 2 | 18.1818 | |
| gduggal-bwavard | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 23.2461 | 13.7546 | 75.0000 | 92.9078 | 37 | 232 | 30 | 10 | 5 | 50.0000 | |
| gduggal-bwavard | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 73.7542 | 72.5490 | 75.0000 | 92.6740 | 37 | 14 | 30 | 10 | 5 | 50.0000 | |
| gduggal-snapfb | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 60.2656 | 47.2000 | 83.3333 | 23.4043 | 59 | 66 | 30 | 6 | 5 | 83.3333 | |
| gduggal-snapfb | INDEL | * | tech_badpromoters | homalt | 92.3077 | 90.9091 | 93.7500 | 53.6232 | 30 | 3 | 30 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | SNP | ti | map_l100_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 75.2066 | 30 | 0 | 30 | 0 | 0 | ||
| gduggal-bwafb | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | het | 78.9474 | 83.3333 | 75.0000 | 90.5660 | 30 | 6 | 30 | 10 | 1 | 10.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | segdup | het | 87.8788 | 78.3784 | 100.0000 | 97.0760 | 29 | 8 | 30 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D1_5 | map_l100_m2_e1 | hetalt | 73.1707 | 58.8235 | 96.7742 | 96.3869 | 30 | 21 | 30 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 51.2821 | 34.8837 | 96.7742 | 79.1946 | 30 | 56 | 30 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 35.7143 | 22.5564 | 85.7143 | 93.7500 | 30 | 103 | 30 | 5 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 59.3452 | 47.5410 | 78.9474 | 87.6623 | 29 | 32 | 30 | 8 | 7 | 87.5000 | |
| gduggal-bwaplat | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 57.4827 | 42.0290 | 90.9091 | 96.2199 | 29 | 40 | 30 | 3 | 3 | 100.0000 | |