PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
48101-48150 / 86044 show all | |||||||||||||||
| jmaeng-gatk | INDEL | D6_15 | func_cds | het | 100.0000 | 100.0000 | 100.0000 | 56.0606 | 29 | 0 | 29 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 90.3728 | 84.8485 | 96.6667 | 61.5385 | 28 | 5 | 29 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | SNP | * | map_l100_m2_e0 | hetalt | 80.5556 | 69.0476 | 96.6667 | 90.4762 | 29 | 13 | 29 | 1 | 1 | 100.0000 | |
| jli-custom | SNP | ti | map_l100_m1_e0 | hetalt | 98.3051 | 100.0000 | 96.6667 | 70.5882 | 29 | 0 | 29 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | * | map_l100_m0_e0 | hetalt | 91.8033 | 84.8485 | 100.0000 | 91.6427 | 28 | 5 | 29 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D16_PLUS | map_siren | homalt | 90.6250 | 85.2941 | 96.6667 | 84.5361 | 29 | 5 | 29 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | map_l250_m0_e0 | het | 91.8033 | 84.8485 | 100.0000 | 92.3483 | 28 | 5 | 29 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 86.5672 | 78.3784 | 96.6667 | 70.5882 | 29 | 8 | 29 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | SNP | ti | map_l100_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 64.6341 | 29 | 0 | 29 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | het | 91.0841 | 86.1111 | 96.6667 | 86.3014 | 31 | 5 | 29 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | C16_PLUS | * | hetalt | 0.0000 | 0.0000 | 96.6667 | 94.6043 | 0 | 0 | 29 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | C16_PLUS | HG002compoundhet | * | 0.0000 | 0.0000 | 87.8788 | 88.4211 | 0 | 0 | 29 | 4 | 4 | 100.0000 | |
| jpowers-varprowl | INDEL | D6_15 | map_l125_m2_e0 | homalt | 89.2308 | 80.5556 | 100.0000 | 84.5745 | 29 | 7 | 29 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D6_15 | map_l125_m2_e1 | homalt | 87.8788 | 78.3784 | 100.0000 | 84.8168 | 29 | 8 | 29 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 80.5556 | 80.5556 | 80.5556 | 64.0000 | 29 | 7 | 29 | 7 | 7 | 100.0000 | |
| jmaeng-gatk | SNP | tv | map_l100_m2_e0 | hetalt | 80.5556 | 69.0476 | 96.6667 | 90.4762 | 29 | 13 | 29 | 1 | 1 | 100.0000 | |
| dgrover-gatk | INDEL | I6_15 | map_l100_m0_e0 | * | 92.0635 | 87.8788 | 96.6667 | 92.7007 | 29 | 4 | 29 | 1 | 1 | 100.0000 | |
| dgrover-gatk | SNP | * | map_l125_m1_e0 | hetalt | 98.3051 | 96.6667 | 100.0000 | 72.3810 | 29 | 1 | 29 | 0 | 0 | ||
| dgrover-gatk | SNP | * | map_l125_m2_e0 | hetalt | 98.3051 | 96.6667 | 100.0000 | 77.1654 | 29 | 1 | 29 | 0 | 0 | ||
| dgrover-gatk | SNP | * | map_l125_m2_e1 | hetalt | 98.3051 | 96.6667 | 100.0000 | 77.1654 | 29 | 1 | 29 | 0 | 0 | ||
| dgrover-gatk | SNP | ti | map_l100_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 68.8172 | 29 | 0 | 29 | 0 | 0 | ||
| dgrover-gatk | SNP | tv | map_l125_m1_e0 | hetalt | 98.3051 | 96.6667 | 100.0000 | 72.3810 | 29 | 1 | 29 | 0 | 0 | ||
| dgrover-gatk | SNP | tv | map_l125_m2_e0 | hetalt | 98.3051 | 96.6667 | 100.0000 | 77.1654 | 29 | 1 | 29 | 0 | 0 | ||
| dgrover-gatk | SNP | tv | map_l125_m2_e1 | hetalt | 98.3051 | 96.6667 | 100.0000 | 77.1654 | 29 | 1 | 29 | 0 | 0 | ||
| egarrison-hhga | INDEL | * | map_l125_m1_e0 | hetalt | 88.8889 | 80.0000 | 100.0000 | 93.5841 | 32 | 8 | 29 | 0 | 0 | ||
| ckim-isaac | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 75.3247 | 63.0435 | 93.5484 | 55.0725 | 29 | 17 | 29 | 2 | 2 | 100.0000 | |
| ckim-isaac | INDEL | D6_15 | map_l100_m2_e0 | homalt | 61.7021 | 44.6154 | 100.0000 | 73.6364 | 29 | 36 | 29 | 0 | 0 | ||
| ckim-isaac | INDEL | D6_15 | map_l100_m2_e1 | homalt | 60.4167 | 43.2836 | 100.0000 | 74.5614 | 29 | 38 | 29 | 0 | 0 | ||
| ckim-vqsr | INDEL | * | map_l100_m0_e0 | hetalt | 91.8033 | 84.8485 | 100.0000 | 91.3690 | 28 | 5 | 29 | 0 | 0 | ||
| ckim-vqsr | INDEL | D6_15 | func_cds | het | 100.0000 | 100.0000 | 100.0000 | 53.9683 | 29 | 0 | 29 | 0 | 0 | ||
| egarrison-hhga | SNP | ti | map_l100_m2_e1 | hetalt | 95.0820 | 93.5484 | 96.6667 | 78.5714 | 29 | 2 | 29 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | * | map_l150_m1_e0 | hetalt | 72.7273 | 57.1429 | 100.0000 | 95.1342 | 12 | 9 | 29 | 0 | 0 | ||
| dgrover-gatk | INDEL | D6_15 | func_cds | het | 100.0000 | 100.0000 | 100.0000 | 51.6667 | 29 | 0 | 29 | 0 | 0 | ||
| egarrison-hhga | INDEL | D1_5 | segdup | hetalt | 72.2591 | 57.6923 | 96.6667 | 96.9168 | 30 | 22 | 29 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | D6_15 | map_l150_m0_e0 | * | 90.4232 | 87.5000 | 93.5484 | 93.6214 | 28 | 4 | 29 | 2 | 2 | 100.0000 | |
| ndellapenna-hhga | INDEL | * | map_l125_m2_e0 | hetalt | 89.4737 | 80.9524 | 100.0000 | 94.7080 | 34 | 8 | 29 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | * | map_l125_m2_e1 | hetalt | 86.9872 | 79.0698 | 96.6667 | 94.6903 | 34 | 9 | 29 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | segdup | hetalt | 73.7490 | 59.6154 | 96.6667 | 97.0385 | 31 | 21 | 29 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | func_cds | het | 100.0000 | 100.0000 | 100.0000 | 46.2963 | 29 | 0 | 29 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 87.5472 | 80.0000 | 96.6667 | 61.0390 | 28 | 7 | 29 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I6_15 | HG002compoundhet | homalt | 53.2110 | 93.5484 | 37.1795 | 63.3803 | 29 | 2 | 29 | 49 | 49 | 100.0000 | |
| ltrigg-rtg2 | SNP | ti | map_l100_m2_e1 | hetalt | 96.6667 | 93.5484 | 100.0000 | 63.7500 | 29 | 2 | 29 | 0 | 0 | ||
| qzeng-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 0.0000 | 0.0000 | 63.0435 | 97.3364 | 0 | 1 | 29 | 17 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 0.0000 | 0.0000 | 63.0435 | 97.3364 | 0 | 1 | 29 | 17 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | map_l125_m2_e1 | * | 51.5647 | 89.2857 | 36.2500 | 95.6873 | 25 | 3 | 29 | 51 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 95.0820 | 100.0000 | 90.6250 | 75.3846 | 16 | 0 | 29 | 3 | 1 | 33.3333 | |
| ndellapenna-hhga | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 79.4521 | 69.0476 | 93.5484 | 96.0710 | 29 | 13 | 29 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l100_m1_e0 | hetalt | 60.5850 | 44.1176 | 96.6667 | 68.7500 | 30 | 38 | 29 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l100_m2_e0 | hetalt | 60.5850 | 44.1176 | 96.6667 | 71.6981 | 30 | 38 | 29 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l125_m2_e1 | homalt | 79.4521 | 78.3784 | 80.5556 | 88.5350 | 29 | 8 | 29 | 7 | 7 | 100.0000 | |