PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
48001-48050 / 86044 show all | |||||||||||||||
| raldana-dualsentieon | SNP | * | map_l125_m2_e1 | hetalt | 96.5517 | 93.3333 | 100.0000 | 72.5490 | 28 | 2 | 28 | 0 | 0 | ||
| raldana-dualsentieon | SNP | tv | map_l125_m1_e0 | hetalt | 96.5517 | 93.3333 | 100.0000 | 67.4419 | 28 | 2 | 28 | 0 | 0 | ||
| raldana-dualsentieon | SNP | tv | map_l125_m2_e0 | hetalt | 96.5517 | 93.3333 | 100.0000 | 72.2772 | 28 | 2 | 28 | 0 | 0 | ||
| raldana-dualsentieon | SNP | tv | map_l125_m2_e1 | hetalt | 96.5517 | 93.3333 | 100.0000 | 72.5490 | 28 | 2 | 28 | 0 | 0 | ||
| gduggal-snapplat | SNP | ti | map_l100_m2_e0 | hetalt | 86.1538 | 93.3333 | 80.0000 | 81.7708 | 28 | 2 | 28 | 7 | 7 | 100.0000 | |
| gduggal-snapvard | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | het | 47.6190 | 83.3333 | 33.3333 | 88.8149 | 30 | 6 | 28 | 56 | 0 | 0.0000 | |
| gduggal-snapvard | SNP | tv | tech_badpromoters | het | 80.0000 | 84.8485 | 75.6757 | 60.6383 | 28 | 5 | 28 | 9 | 1 | 11.1111 | |
| ghariani-varprowl | INDEL | D6_15 | func_cds | het | 91.8033 | 96.5517 | 87.5000 | 57.8947 | 28 | 1 | 28 | 4 | 4 | 100.0000 | |
| ghariani-varprowl | INDEL | D6_15 | map_l125_m0_e0 | het | 86.1538 | 96.5517 | 77.7778 | 95.0549 | 28 | 1 | 28 | 8 | 8 | 100.0000 | |
| ghariani-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 19.9827 | 12.2677 | 53.8462 | 92.1805 | 33 | 236 | 28 | 24 | 13 | 54.1667 | |
| gduggal-snapfb | INDEL | D6_15 | map_l125_m2_e1 | homalt | 82.3529 | 75.6757 | 90.3226 | 90.4615 | 28 | 9 | 28 | 3 | 3 | 100.0000 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 33.1361 | 22.5806 | 62.2222 | 91.9210 | 35 | 120 | 28 | 17 | 1 | 5.8824 | |
| gduggal-snapplat | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 11.3424 | 10.7807 | 11.9658 | 93.0543 | 29 | 240 | 28 | 206 | 15 | 7.2816 | |
| gduggal-snapplat | INDEL | I1_5 | map_siren | hetalt | 38.7454 | 26.7857 | 70.0000 | 97.4795 | 30 | 82 | 28 | 12 | 6 | 50.0000 | |
| gduggal-snapvard | INDEL | I16_PLUS | map_siren | * | 4.4800 | 2.3256 | 60.8696 | 78.5047 | 2 | 84 | 28 | 18 | 12 | 66.6667 | |
| gduggal-snapvard | INDEL | I16_PLUS | map_siren | het | 7.6607 | 4.0816 | 62.2222 | 78.3654 | 2 | 47 | 28 | 17 | 11 | 64.7059 | |
| gduggal-snapfb | SNP | * | map_l125_m1_e0 | hetalt | 91.8033 | 93.3333 | 90.3226 | 86.9198 | 28 | 2 | 28 | 3 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | * | map_l125_m2_e0 | hetalt | 91.8033 | 93.3333 | 90.3226 | 87.8431 | 28 | 2 | 28 | 3 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | * | map_l125_m2_e1 | hetalt | 91.8033 | 93.3333 | 90.3226 | 87.9377 | 28 | 2 | 28 | 3 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | ti | map_l100_m1_e0 | hetalt | 94.9153 | 96.5517 | 93.3333 | 84.4560 | 28 | 1 | 28 | 2 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | tv | map_l125_m1_e0 | hetalt | 91.8033 | 93.3333 | 90.3226 | 86.9198 | 28 | 2 | 28 | 3 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | tv | map_l125_m2_e0 | hetalt | 91.8033 | 93.3333 | 90.3226 | 87.8431 | 28 | 2 | 28 | 3 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | tv | map_l125_m2_e1 | hetalt | 91.8033 | 93.3333 | 90.3226 | 87.9377 | 28 | 2 | 28 | 3 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | D16_PLUS | map_siren | hetalt | 91.2281 | 83.8710 | 100.0000 | 84.0000 | 26 | 5 | 28 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D6_15 | func_cds | het | 98.2456 | 96.5517 | 100.0000 | 54.0984 | 28 | 1 | 28 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I6_15 | map_l100_m0_e0 | * | 88.5764 | 81.8182 | 96.5517 | 93.4389 | 27 | 6 | 28 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | D6_15 | map_l125_m0_e0 | het | 98.2456 | 96.5517 | 100.0000 | 94.6768 | 28 | 1 | 28 | 0 | 0 | ||
| astatham-gatk | INDEL | D6_15 | map_l150_m2_e1 | homalt | 98.2456 | 96.5517 | 100.0000 | 89.6296 | 28 | 1 | 28 | 0 | 0 | ||
| astatham-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 96.2963 | 92.8571 | 100.0000 | 60.0000 | 26 | 2 | 28 | 0 | 0 | ||
| anovak-vg | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 24.9332 | 16.1290 | 54.9020 | 84.7305 | 10 | 52 | 28 | 23 | 8 | 34.7826 | |
| anovak-vg | INDEL | I6_15 | map_l100_m1_e0 | homalt | 64.7111 | 78.7879 | 54.9020 | 77.9221 | 26 | 7 | 28 | 23 | 19 | 82.6087 | |
| anovak-vg | INDEL | I6_15 | map_l100_m2_e0 | homalt | 63.9719 | 78.7879 | 53.8462 | 79.8450 | 26 | 7 | 28 | 24 | 20 | 83.3333 | |
| anovak-vg | INDEL | I6_15 | map_l100_m2_e1 | homalt | 63.9719 | 78.7879 | 53.8462 | 80.2281 | 26 | 7 | 28 | 24 | 20 | 83.3333 | |
| asubramanian-gatk | SNP | ti | map_siren | hetalt | 65.8824 | 49.1228 | 100.0000 | 83.6257 | 28 | 29 | 28 | 0 | 0 | ||
| anovak-vg | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 30.6011 | 28.0000 | 33.7349 | 46.7949 | 21 | 54 | 28 | 55 | 49 | 89.0909 | |
| anovak-vg | INDEL | D6_15 | map_l125_m0_e0 | het | 80.1909 | 82.7586 | 77.7778 | 92.4051 | 24 | 5 | 28 | 8 | 6 | 75.0000 | |
| anovak-vg | INDEL | D6_15 | map_l125_m1_e0 | homalt | 84.8485 | 82.3529 | 87.5000 | 86.6109 | 28 | 6 | 28 | 4 | 4 | 100.0000 | |
| anovak-vg | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 21.1214 | 16.8539 | 28.2828 | 55.6054 | 30 | 148 | 28 | 71 | 27 | 38.0282 | |
| bgallagher-sentieon | INDEL | D6_15 | map_l125_m0_e0 | het | 98.2456 | 96.5517 | 100.0000 | 94.6257 | 28 | 1 | 28 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D6_15 | map_l150_m2_e1 | homalt | 98.2456 | 96.5517 | 100.0000 | 89.6679 | 28 | 1 | 28 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 96.2963 | 92.8571 | 100.0000 | 60.0000 | 26 | 2 | 28 | 0 | 0 | ||
| bgallagher-sentieon | SNP | * | map_l125_m1_e0 | hetalt | 96.5517 | 93.3333 | 100.0000 | 71.4286 | 28 | 2 | 28 | 0 | 0 | ||
| bgallagher-sentieon | SNP | * | map_l125_m2_e0 | hetalt | 96.5517 | 93.3333 | 100.0000 | 76.0684 | 28 | 2 | 28 | 0 | 0 | ||
| bgallagher-sentieon | SNP | * | map_l125_m2_e1 | hetalt | 96.5517 | 93.3333 | 100.0000 | 76.0684 | 28 | 2 | 28 | 0 | 0 | ||
| bgallagher-sentieon | SNP | ti | map_l100_m1_e0 | hetalt | 98.2456 | 96.5517 | 100.0000 | 68.8889 | 28 | 1 | 28 | 0 | 0 | ||
| bgallagher-sentieon | SNP | tv | map_l125_m1_e0 | hetalt | 96.5517 | 93.3333 | 100.0000 | 71.4286 | 28 | 2 | 28 | 0 | 0 | ||
| bgallagher-sentieon | SNP | tv | map_l125_m2_e0 | hetalt | 96.5517 | 93.3333 | 100.0000 | 76.0684 | 28 | 2 | 28 | 0 | 0 | ||
| bgallagher-sentieon | SNP | tv | map_l125_m2_e1 | hetalt | 96.5517 | 93.3333 | 100.0000 | 76.0684 | 28 | 2 | 28 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I6_15 | map_l100_m0_e0 | * | 92.0635 | 87.8788 | 96.6667 | 92.3469 | 29 | 4 | 29 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | SNP | ti | map_l100_m2_e0 | hetalt | 98.3051 | 96.6667 | 100.0000 | 70.4082 | 29 | 1 | 29 | 0 | 0 | ||