PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
47851-47900 / 86044 show all | |||||||||||||||
| ckim-vqsr | INDEL | D16_PLUS | map_l125_m2_e1 | * | 94.7368 | 96.4286 | 93.1034 | 97.7658 | 27 | 1 | 27 | 2 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | D6_15 | map_l150_m2_e0 | homalt | 98.1818 | 96.4286 | 100.0000 | 90.2527 | 27 | 1 | 27 | 0 | 0 | ||
| ckim-vqsr | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 94.3396 | 89.2857 | 100.0000 | 58.4615 | 25 | 3 | 27 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | map_l125_m1_e0 | het | 93.1034 | 90.0000 | 96.4286 | 94.4773 | 27 | 3 | 27 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I6_15 | map_l125_m2_e0 | het | 93.1034 | 90.0000 | 96.4286 | 95.0877 | 27 | 3 | 27 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I6_15 | map_l125_m2_e1 | het | 93.1034 | 90.0000 | 96.4286 | 95.2055 | 27 | 3 | 27 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | D6_15 | map_l125_m0_e0 | het | 94.9153 | 96.5517 | 93.3333 | 95.7204 | 28 | 1 | 28 | 2 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | D6_15 | map_l150_m2_e1 | homalt | 98.2456 | 96.5517 | 100.0000 | 90.0356 | 28 | 1 | 28 | 0 | 0 | ||
| ckim-isaac | INDEL | D6_15 | map_l100_m1_e0 | homalt | 60.8696 | 43.7500 | 100.0000 | 72.0000 | 28 | 36 | 28 | 0 | 0 | ||
| ckim-isaac | INDEL | D6_15 | map_l150_m1_e0 | * | 54.9020 | 38.3562 | 96.5517 | 93.4389 | 28 | 45 | 28 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 64.3678 | 47.4576 | 100.0000 | 54.8387 | 28 | 31 | 28 | 0 | 0 | ||
| egarrison-hhga | INDEL | D6_15 | func_cds | het | 98.2456 | 96.5517 | 100.0000 | 45.0980 | 28 | 1 | 28 | 0 | 0 | ||
| egarrison-hhga | INDEL | D6_15 | map_l150_m2_e1 | homalt | 96.5517 | 96.5517 | 96.5517 | 88.6719 | 28 | 1 | 28 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | I6_15 | HG002compoundhet | homalt | 19.2440 | 90.3226 | 10.7692 | 63.7883 | 28 | 3 | 28 | 232 | 206 | 88.7931 | |
| egarrison-hhga | INDEL | I6_15 | map_l100_m0_e0 | * | 91.8033 | 84.8485 | 100.0000 | 90.6040 | 28 | 5 | 28 | 0 | 0 | ||
| egarrison-hhga | SNP | * | map_l125_m1_e0 | hetalt | 96.5517 | 93.3333 | 100.0000 | 78.2946 | 28 | 2 | 28 | 0 | 0 | ||
| egarrison-hhga | SNP | * | map_l125_m2_e0 | hetalt | 96.5517 | 93.3333 | 100.0000 | 81.3333 | 28 | 2 | 28 | 0 | 0 | ||
| egarrison-hhga | SNP | * | map_l125_m2_e1 | hetalt | 96.5517 | 93.3333 | 100.0000 | 81.4570 | 28 | 2 | 28 | 0 | 0 | ||
| egarrison-hhga | SNP | ti | map_l100_m2_e0 | hetalt | 94.9153 | 93.3333 | 96.5517 | 78.9855 | 28 | 2 | 28 | 1 | 1 | 100.0000 | |
| egarrison-hhga | SNP | tv | map_l125_m1_e0 | hetalt | 96.5517 | 93.3333 | 100.0000 | 78.2946 | 28 | 2 | 28 | 0 | 0 | ||
| egarrison-hhga | SNP | tv | map_l125_m2_e0 | hetalt | 96.5517 | 93.3333 | 100.0000 | 81.3333 | 28 | 2 | 28 | 0 | 0 | ||
| egarrison-hhga | SNP | tv | map_l125_m2_e1 | hetalt | 96.5517 | 93.3333 | 100.0000 | 81.4570 | 28 | 2 | 28 | 0 | 0 | ||
| eyeh-varpipe | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 59.5745 | 50.0000 | 73.6842 | 74.3243 | 25 | 25 | 28 | 10 | 7 | 70.0000 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 40.0000 | 93.0830 | 0 | 0 | 28 | 42 | 14 | 33.3333 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 87.5000 | 96.2175 | 0 | 0 | 28 | 4 | 1 | 25.0000 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 0.0000 | 0.0000 | 84.8485 | 96.8116 | 0 | 0 | 28 | 5 | 2 | 40.0000 | |
| dgrover-gatk | INDEL | D6_15 | map_l125_m0_e0 | het | 98.2456 | 96.5517 | 100.0000 | 94.8052 | 28 | 1 | 28 | 0 | 0 | ||
| dgrover-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 96.2963 | 92.8571 | 100.0000 | 60.0000 | 26 | 2 | 28 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | ti | map_l100_m2_e0 | hetalt | 96.5517 | 93.3333 | 100.0000 | 64.5570 | 28 | 2 | 28 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | het | 91.0330 | 86.1111 | 96.5517 | 86.1244 | 31 | 5 | 28 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | tv | map_l125_m1_e0 | hetalt | 96.5517 | 93.3333 | 100.0000 | 61.1111 | 28 | 2 | 28 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | tv | map_l125_m2_e0 | hetalt | 96.5517 | 93.3333 | 100.0000 | 67.4419 | 28 | 2 | 28 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | tv | map_l125_m2_e1 | hetalt | 96.5517 | 93.3333 | 100.0000 | 67.4419 | 28 | 2 | 28 | 0 | 0 | ||
| qzeng-custom | INDEL | D16_PLUS | map_l125_m1_e0 | * | 53.2117 | 92.5926 | 37.3333 | 95.7069 | 25 | 2 | 28 | 47 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | map_l125_m2_e0 | * | 51.7369 | 92.5926 | 35.8974 | 95.7470 | 25 | 2 | 28 | 50 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D6_15 | map_l150_m0_e0 | * | 80.7692 | 75.0000 | 87.5000 | 96.5517 | 24 | 8 | 28 | 4 | 2 | 50.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | map_siren | homalt | 90.3226 | 82.3529 | 100.0000 | 82.1656 | 28 | 6 | 28 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D6_15 | func_cds | het | 98.2456 | 96.5517 | 100.0000 | 44.0000 | 28 | 1 | 28 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 72.5100 | 61.9048 | 87.5000 | 94.9126 | 26 | 16 | 28 | 4 | 1 | 25.0000 | |
| ltrigg-rtg2 | SNP | * | map_l125_m1_e0 | hetalt | 96.5517 | 93.3333 | 100.0000 | 61.1111 | 28 | 2 | 28 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | * | map_l125_m2_e0 | hetalt | 96.5517 | 93.3333 | 100.0000 | 67.4419 | 28 | 2 | 28 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | * | map_l125_m2_e1 | hetalt | 96.5517 | 93.3333 | 100.0000 | 67.4419 | 28 | 2 | 28 | 0 | 0 | ||
| mlin-fermikit | INDEL | D6_15 | func_cds | het | 98.2456 | 96.5517 | 100.0000 | 36.3636 | 28 | 1 | 28 | 0 | 0 | ||
| mlin-fermikit | INDEL | D6_15 | map_l125_m2_e0 | homalt | 78.8732 | 77.7778 | 80.0000 | 88.6731 | 28 | 8 | 28 | 7 | 7 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | HG002compoundhet | homalt | 11.9676 | 93.5484 | 6.3927 | 50.6201 | 29 | 2 | 28 | 410 | 408 | 99.5122 | |
| mlin-fermikit | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | * | 67.4699 | 66.6667 | 68.2927 | 90.5747 | 28 | 14 | 28 | 13 | 12 | 92.3077 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 79.2079 | 65.5738 | 100.0000 | 54.0984 | 40 | 21 | 28 | 0 | 0 | ||
| qzeng-custom | SNP | * | map_l100_m1_e0 | hetalt | 81.1594 | 68.2927 | 100.0000 | 88.6179 | 28 | 13 | 28 | 0 | 0 | ||
| qzeng-custom | SNP | tv | map_l100_m1_e0 | hetalt | 81.1594 | 68.2927 | 100.0000 | 88.6179 | 28 | 13 | 28 | 0 | 0 | ||
| ndellapenna-hhga | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | het | 86.1538 | 77.7778 | 96.5517 | 86.0577 | 28 | 8 | 28 | 1 | 0 | 0.0000 | |