PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
47801-47850 / 86044 show all | |||||||||||||||
| gduggal-snapplat | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 50.0000 | 39.1304 | 69.2308 | 97.4017 | 27 | 42 | 27 | 12 | 6 | 50.0000 | |
| gduggal-snapplat | SNP | ti | map_l100_m1_e0 | hetalt | 85.7143 | 93.1034 | 79.4118 | 79.6407 | 27 | 2 | 27 | 7 | 7 | 100.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 2.6388 | 1.3951 | 24.3243 | 79.2910 | 25 | 1767 | 27 | 84 | 48 | 57.1429 | |
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 4.6119 | 2.5026 | 29.3478 | 74.2297 | 24 | 935 | 27 | 65 | 39 | 60.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 5.8388 | 3.2419 | 29.3478 | 73.4870 | 13 | 388 | 27 | 65 | 39 | 60.0000 | |
| anovak-vg | INDEL | I6_15 | func_cds | * | 63.7892 | 60.4651 | 67.5000 | 37.5000 | 26 | 17 | 27 | 13 | 10 | 76.9231 | |
| anovak-vg | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 60.8696 | 77.7778 | 50.0000 | 52.2124 | 28 | 8 | 27 | 27 | 21 | 77.7778 | |
| anovak-vg | SNP | tv | tech_badpromoters | het | 85.7143 | 81.8182 | 90.0000 | 48.2759 | 27 | 6 | 27 | 3 | 3 | 100.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | map_l100_m2_e1 | hetalt | 90.9091 | 83.3333 | 100.0000 | 78.4000 | 25 | 5 | 27 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D16_PLUS | map_l125_m1_e0 | * | 94.7368 | 100.0000 | 90.0000 | 96.5398 | 27 | 0 | 27 | 3 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | map_l125_m2_e0 | * | 93.1034 | 100.0000 | 87.0968 | 96.9578 | 27 | 0 | 27 | 4 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | map_l125_m2_e1 | * | 91.5254 | 96.4286 | 87.0968 | 97.0363 | 27 | 1 | 27 | 4 | 0 | 0.0000 | |
| astatham-gatk | INDEL | D16_PLUS | map_l100_m2_e1 | hetalt | 90.9091 | 83.3333 | 100.0000 | 78.2258 | 25 | 5 | 27 | 0 | 0 | ||
| astatham-gatk | INDEL | D16_PLUS | map_l125_m1_e0 | * | 96.4286 | 100.0000 | 93.1034 | 96.8581 | 27 | 0 | 27 | 2 | 0 | 0.0000 | |
| astatham-gatk | INDEL | D16_PLUS | map_l125_m2_e0 | * | 94.7368 | 100.0000 | 90.0000 | 97.2603 | 27 | 0 | 27 | 3 | 0 | 0.0000 | |
| astatham-gatk | INDEL | D16_PLUS | map_l125_m2_e1 | * | 93.1034 | 96.4286 | 90.0000 | 97.3238 | 27 | 1 | 27 | 3 | 0 | 0.0000 | |
| astatham-gatk | INDEL | D6_15 | map_l150_m2_e0 | homalt | 98.1818 | 96.4286 | 100.0000 | 89.8496 | 27 | 1 | 27 | 0 | 0 | ||
| astatham-gatk | INDEL | I6_15 | map_l125_m1_e0 | het | 91.5254 | 90.0000 | 93.1034 | 92.1622 | 27 | 3 | 27 | 2 | 1 | 50.0000 | |
| astatham-gatk | INDEL | I6_15 | map_l125_m2_e0 | het | 91.5254 | 90.0000 | 93.1034 | 92.8395 | 27 | 3 | 27 | 2 | 1 | 50.0000 | |
| astatham-gatk | INDEL | I6_15 | map_l125_m2_e1 | het | 91.5254 | 90.0000 | 93.1034 | 92.9782 | 27 | 3 | 27 | 2 | 1 | 50.0000 | |
| bgallagher-sentieon | INDEL | D6_15 | map_l150_m2_e0 | homalt | 98.1818 | 96.4286 | 100.0000 | 89.8876 | 27 | 1 | 27 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I6_15 | map_l125_m1_e0 | het | 91.5254 | 90.0000 | 93.1034 | 91.9220 | 27 | 3 | 27 | 2 | 1 | 50.0000 | |
| bgallagher-sentieon | INDEL | I6_15 | map_l125_m2_e0 | het | 91.5254 | 90.0000 | 93.1034 | 92.6209 | 27 | 3 | 27 | 2 | 1 | 50.0000 | |
| bgallagher-sentieon | INDEL | I6_15 | map_l125_m2_e1 | het | 91.5254 | 90.0000 | 93.1034 | 92.7500 | 27 | 3 | 27 | 2 | 1 | 50.0000 | |
| anovak-vg | INDEL | C1_5 | HG002compoundhet | het | 0.0000 | 0.0000 | 13.6364 | 74.7449 | 0 | 0 | 27 | 171 | 11 | 6.4328 | |
| anovak-vg | INDEL | C1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 21.1765 | 33.3333 | 15.5172 | 87.3085 | 1 | 2 | 27 | 147 | 5 | 3.4014 | |
| anovak-vg | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 0.0000 | 0.0000 | 20.4545 | 88.0109 | 0 | 1 | 27 | 105 | 4 | 3.8095 | |
| anovak-vg | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 0.0000 | 0.0000 | 20.4545 | 88.0109 | 0 | 1 | 27 | 105 | 4 | 3.8095 | |
| anovak-vg | INDEL | D16_PLUS | map_l100_m2_e1 | het | 61.1033 | 47.0588 | 87.0968 | 85.9091 | 24 | 27 | 27 | 4 | 3 | 75.0000 | |
| asubramanian-gatk | INDEL | D6_15 | map_l125_m0_e0 | het | 96.4286 | 93.1034 | 100.0000 | 95.6240 | 27 | 2 | 27 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 78.0641 | 95.8333 | 65.8537 | 76.1628 | 23 | 1 | 27 | 14 | 14 | 100.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | map_l100_m2_e1 | hetalt | 90.9091 | 83.3333 | 100.0000 | 74.0385 | 25 | 5 | 27 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D6_15 | map_l150_m2_e0 | homalt | 98.1818 | 96.4286 | 100.0000 | 90.5263 | 27 | 1 | 27 | 0 | 0 | ||
| ckim-isaac | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 54.0000 | 38.0282 | 93.1034 | 47.2727 | 27 | 44 | 27 | 2 | 2 | 100.0000 | |
| ckim-isaac | INDEL | D6_15 | func_cds | het | 96.4901 | 96.5517 | 96.4286 | 42.8571 | 28 | 1 | 27 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 84.3750 | 77.1429 | 93.1034 | 76.8000 | 27 | 8 | 27 | 2 | 1 | 50.0000 | |
| ckim-isaac | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 68.3544 | 57.4468 | 84.3750 | 66.6667 | 27 | 20 | 27 | 5 | 3 | 60.0000 | |
| egarrison-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 72.7273 | 57.1429 | 100.0000 | 27.0270 | 28 | 21 | 27 | 0 | 0 | ||
| egarrison-hhga | INDEL | D6_15 | map_l150_m2_e0 | homalt | 96.4286 | 96.4286 | 96.4286 | 88.9328 | 27 | 1 | 27 | 1 | 1 | 100.0000 | |
| ckim-isaac | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | * | 66.1640 | 61.9048 | 71.0526 | 87.6623 | 26 | 16 | 27 | 11 | 5 | 45.4545 | |
| dgrover-gatk | INDEL | D16_PLUS | map_l100_m2_e1 | hetalt | 90.9091 | 83.3333 | 100.0000 | 78.7402 | 25 | 5 | 27 | 0 | 0 | ||
| dgrover-gatk | INDEL | D6_15 | map_l150_m2_e1 | homalt | 96.4286 | 93.1034 | 100.0000 | 90.0369 | 27 | 2 | 27 | 0 | 0 | ||
| dgrover-gatk | INDEL | I6_15 | map_l125_m1_e0 | het | 91.5254 | 90.0000 | 93.1034 | 92.3483 | 27 | 3 | 27 | 2 | 1 | 50.0000 | |
| dgrover-gatk | INDEL | I6_15 | map_l125_m2_e0 | het | 91.5254 | 90.0000 | 93.1034 | 92.9952 | 27 | 3 | 27 | 2 | 1 | 50.0000 | |
| dgrover-gatk | INDEL | I6_15 | map_l125_m2_e1 | het | 91.5254 | 90.0000 | 93.1034 | 93.1442 | 27 | 3 | 27 | 2 | 1 | 50.0000 | |
| egarrison-hhga | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 87.0968 | 77.1429 | 100.0000 | 90.2174 | 27 | 8 | 27 | 0 | 0 | ||
| egarrison-hhga | SNP | ti | map_l100_m1_e0 | hetalt | 94.7368 | 93.1034 | 96.4286 | 76.8595 | 27 | 2 | 27 | 1 | 1 | 100.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | map_l100_m2_e1 | hetalt | 90.9091 | 83.3333 | 100.0000 | 76.7241 | 25 | 5 | 27 | 0 | 0 | ||
| ckim-vqsr | INDEL | D16_PLUS | map_l125_m1_e0 | * | 96.4286 | 100.0000 | 93.1034 | 97.3098 | 27 | 0 | 27 | 2 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | map_l125_m2_e0 | * | 96.4286 | 100.0000 | 93.1034 | 97.7147 | 27 | 0 | 27 | 2 | 0 | 0.0000 | |