PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
47651-47700 / 86044 show all | |||||||||||||||
| ckim-isaac | INDEL | D1_5 | map_l250_m0_e0 | * | 71.2329 | 56.5217 | 96.2963 | 98.0519 | 26 | 20 | 26 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | map_l100_m0_e0 | * | 82.5397 | 92.8571 | 74.2857 | 96.0362 | 26 | 2 | 26 | 9 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | D16_PLUS | map_l100_m2_e1 | hetalt | 87.3950 | 80.0000 | 96.2963 | 79.2308 | 24 | 6 | 26 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 91.2281 | 100.0000 | 83.8710 | 92.0716 | 25 | 0 | 26 | 5 | 3 | 60.0000 | |
| anovak-vg | INDEL | * | tech_badpromoters | homalt | 76.1124 | 75.7576 | 76.4706 | 47.6923 | 25 | 8 | 26 | 8 | 7 | 87.5000 | |
| anovak-vg | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 49.6562 | 36.7647 | 76.4706 | 96.4620 | 25 | 43 | 26 | 8 | 7 | 87.5000 | |
| anovak-vg | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 67.7209 | 62.2222 | 74.2857 | 53.3333 | 28 | 17 | 26 | 9 | 6 | 66.6667 | |
| anovak-vg | INDEL | D16_PLUS | map_l100_m2_e0 | het | 61.7131 | 47.9167 | 86.6667 | 86.2385 | 23 | 25 | 26 | 4 | 3 | 75.0000 | |
| anovak-vg | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 16.3986 | 10.1523 | 42.6230 | 80.1303 | 20 | 177 | 26 | 35 | 26 | 74.2857 | |
| anovak-vg | INDEL | I1_5 | func_cds | het | 53.0612 | 44.0678 | 66.6667 | 45.0704 | 26 | 33 | 26 | 13 | 3 | 23.0769 | |
| anovak-vg | INDEL | I6_15 | map_l100_m0_e0 | * | 61.7886 | 57.5758 | 66.6667 | 85.3933 | 19 | 14 | 26 | 13 | 6 | 46.1538 | |
| anovak-vg | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 73.8636 | 71.4286 | 76.4706 | 89.6024 | 25 | 10 | 26 | 8 | 5 | 62.5000 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 97.9592 | 96.0000 | 100.0000 | 42.2222 | 24 | 1 | 26 | 0 | 0 | ||
| ckim-gatk | INDEL | D16_PLUS | map_l100_m0_e0 | * | 88.1356 | 92.8571 | 83.8710 | 97.1001 | 26 | 2 | 26 | 5 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l150_m2_e0 | homalt | 96.2963 | 92.8571 | 100.0000 | 92.1687 | 26 | 2 | 26 | 0 | 0 | ||
| ckim-dragen | INDEL | I6_15 | map_l150_m2_e1 | * | 98.1132 | 96.2963 | 100.0000 | 95.5095 | 26 | 1 | 26 | 0 | 0 | ||
| ciseli-custom | SNP | * | map_l100_m1_e0 | hetalt | 71.2329 | 63.4146 | 81.2500 | 73.7705 | 26 | 15 | 26 | 6 | 5 | 83.3333 | |
| ciseli-custom | SNP | tv | map_l100_m1_e0 | hetalt | 71.2329 | 63.4146 | 81.2500 | 73.7705 | 26 | 15 | 26 | 6 | 5 | 83.3333 | |
| cchapple-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 94.5455 | 100.0000 | 89.6552 | 92.7861 | 1 | 0 | 26 | 3 | 1 | 33.3333 | |
| cchapple-custom | INDEL | C1_5 | map_l100_m1_e0 | het | 0.0000 | 0.0000 | 60.4651 | 94.8687 | 0 | 0 | 26 | 17 | 8 | 47.0588 | |
| cchapple-custom | INDEL | C1_5 | map_l100_m2_e0 | het | 0.0000 | 0.0000 | 57.7778 | 95.0166 | 0 | 0 | 26 | 19 | 9 | 47.3684 | |
| cchapple-custom | INDEL | D16_PLUS | map_l125_m1_e0 | * | 91.2281 | 96.2963 | 86.6667 | 94.5055 | 26 | 1 | 26 | 4 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D16_PLUS | map_l125_m2_e0 | * | 91.2281 | 96.2963 | 86.6667 | 95.1923 | 26 | 1 | 26 | 4 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D16_PLUS | map_l125_m2_e1 | * | 89.6552 | 92.8571 | 86.6667 | 95.3125 | 26 | 2 | 26 | 4 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D6_15 | map_l150_m2_e0 | homalt | 94.5455 | 92.8571 | 96.2963 | 86.2245 | 26 | 2 | 26 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | I16_PLUS | map_l100_m1_e0 | * | 91.1641 | 96.1538 | 86.6667 | 93.9880 | 25 | 1 | 26 | 4 | 1 | 25.0000 | |
| cchapple-custom | INDEL | I16_PLUS | map_l100_m2_e0 | * | 91.1641 | 96.1538 | 86.6667 | 94.7826 | 25 | 1 | 26 | 4 | 1 | 25.0000 | |
| cchapple-custom | INDEL | I16_PLUS | map_l100_m2_e1 | * | 91.1641 | 96.1538 | 86.6667 | 94.8718 | 25 | 1 | 26 | 4 | 1 | 25.0000 | |
| ciseli-custom | INDEL | D6_15 | map_l125_m1_e0 | homalt | 61.3636 | 79.4118 | 50.0000 | 87.9908 | 27 | 7 | 26 | 26 | 24 | 92.3077 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 25.2427 | 15.4762 | 68.4211 | 87.0748 | 26 | 142 | 26 | 12 | 8 | 66.6667 | |
| ciseli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 56.5463 | 51.0204 | 63.4146 | 78.6458 | 25 | 24 | 26 | 15 | 14 | 93.3333 | |
| ciseli-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 0.0000 | 0.0000 | 39.7059 | 96.7006 | 0 | 1 | 27 | 41 | 5 | 12.1951 | |
| ciseli-custom | INDEL | D6_15 | map_l125_m2_e0 | homalt | 61.5635 | 77.7778 | 50.9434 | 88.8889 | 28 | 8 | 27 | 26 | 24 | 92.3077 | |
| ciseli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 28.1655 | 19.4631 | 50.9434 | 80.0000 | 29 | 120 | 27 | 26 | 21 | 80.7692 | |
| ckim-dragen | INDEL | D16_PLUS | map_l100_m2_e1 | hetalt | 90.9091 | 83.3333 | 100.0000 | 76.9231 | 25 | 5 | 27 | 0 | 0 | ||
| ckim-dragen | INDEL | D6_15 | map_l150_m2_e1 | homalt | 96.4286 | 93.1034 | 100.0000 | 92.0354 | 27 | 2 | 27 | 0 | 0 | ||
| cchapple-custom | INDEL | I6_15 | map_l100_m0_e0 | * | 88.7845 | 84.8485 | 93.1034 | 92.0330 | 28 | 5 | 27 | 2 | 1 | 50.0000 | |
| ciseli-custom | INDEL | * | map_l250_m0_e0 | het | 51.9039 | 49.0566 | 55.1020 | 98.7937 | 26 | 27 | 27 | 22 | 5 | 22.7273 | |
| ciseli-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 0.0000 | 0.0000 | 39.7059 | 96.7006 | 0 | 1 | 27 | 41 | 5 | 12.1951 | |
| ckim-gatk | INDEL | D16_PLUS | map_l100_m2_e1 | hetalt | 90.9091 | 83.3333 | 100.0000 | 76.7241 | 25 | 5 | 27 | 0 | 0 | ||
| ckim-gatk | INDEL | D16_PLUS | map_l125_m1_e0 | * | 94.7368 | 100.0000 | 90.0000 | 97.2196 | 27 | 0 | 27 | 3 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D16_PLUS | map_l125_m2_e0 | * | 94.7368 | 100.0000 | 90.0000 | 97.6378 | 27 | 0 | 27 | 3 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D16_PLUS | map_l125_m2_e1 | * | 93.1034 | 96.4286 | 90.0000 | 97.6905 | 27 | 1 | 27 | 3 | 0 | 0.0000 | |
| cchapple-custom | INDEL | C1_5 | map_l100_m2_e1 | het | 0.0000 | 0.0000 | 58.6957 | 95.0324 | 0 | 0 | 27 | 19 | 9 | 47.3684 | |
| cchapple-custom | INDEL | C1_5 | map_l125_m1_e0 | * | 0.0000 | 0.0000 | 65.8537 | 94.7301 | 0 | 0 | 27 | 14 | 7 | 50.0000 | |
| cchapple-custom | INDEL | D6_15 | map_l150_m2_e1 | homalt | 93.1034 | 93.1034 | 93.1034 | 85.5721 | 27 | 2 | 27 | 2 | 2 | 100.0000 | |
| ckim-gatk | INDEL | D6_15 | map_l150_m2_e0 | homalt | 98.1818 | 96.4286 | 100.0000 | 90.2527 | 27 | 1 | 27 | 0 | 0 | ||
| ckim-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 94.3396 | 89.2857 | 100.0000 | 58.4615 | 25 | 3 | 27 | 0 | 0 | ||
| ckim-gatk | SNP | * | map_l100_m1_e0 | hetalt | 78.2609 | 65.8537 | 96.4286 | 89.0625 | 27 | 14 | 27 | 1 | 1 | 100.0000 | |
| ckim-gatk | SNP | tv | map_l100_m1_e0 | hetalt | 78.2609 | 65.8537 | 96.4286 | 89.0625 | 27 | 14 | 27 | 1 | 1 | 100.0000 | |