PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
47451-47500 / 86044 show all | |||||||||||||||
| jpowers-varprowl | INDEL | D6_15 | map_l150_m0_e0 | * | 79.3651 | 78.1250 | 80.6452 | 93.7120 | 25 | 7 | 25 | 6 | 6 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 49.7306 | 39.3443 | 67.5676 | 84.2553 | 24 | 37 | 25 | 12 | 11 | 91.6667 | |
| jpowers-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 69.9301 | 58.8235 | 86.2069 | 92.6952 | 30 | 21 | 25 | 4 | 1 | 25.0000 | |
| jmaeng-gatk | INDEL | D6_15 | map_l150_m1_e0 | homalt | 98.0392 | 96.1538 | 100.0000 | 89.7119 | 25 | 1 | 25 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 90.9091 | 100.0000 | 83.3333 | 92.3858 | 25 | 0 | 25 | 5 | 3 | 60.0000 | |
| jmaeng-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 95.5224 | 91.4286 | 100.0000 | 91.2892 | 32 | 3 | 25 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 0.0000 | 0.0000 | 92.5926 | 95.3846 | 0 | 0 | 25 | 2 | 2 | 100.0000 | |
| ltrigg-rtg2 | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 0.0000 | 0.0000 | 96.1538 | 97.0115 | 0 | 0 | 25 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | map_l125_m1_e0 | * | 94.3396 | 92.5926 | 96.1538 | 92.5714 | 25 | 2 | 25 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | map_l125_m2_e0 | * | 94.3396 | 92.5926 | 96.1538 | 93.1579 | 25 | 2 | 25 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | map_l125_m2_e1 | * | 92.5926 | 89.2857 | 96.1538 | 93.2468 | 25 | 3 | 25 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | map_l100_m0_e0 | * | 87.7193 | 89.2857 | 86.2069 | 94.9740 | 25 | 3 | 25 | 4 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 94.3396 | 100.0000 | 89.2857 | 91.7647 | 25 | 0 | 25 | 3 | 2 | 66.6667 | |
| rpoplin-dv42 | INDEL | D6_15 | map_l150_m1_e0 | homalt | 98.0392 | 96.1538 | 100.0000 | 90.3846 | 25 | 1 | 25 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 92.3077 | 85.7143 | 100.0000 | 53.7037 | 24 | 4 | 25 | 0 | 0 | ||
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 81.3559 | 68.5714 | 100.0000 | 76.1905 | 24 | 11 | 25 | 0 | 0 | ||
| mlin-fermikit | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 43.8101 | 60.7843 | 34.2466 | 81.0390 | 31 | 20 | 25 | 48 | 46 | 95.8333 | |
| ndellapenna-hhga | SNP | * | map_l125_m1_e0 | hetalt | 90.9091 | 83.3333 | 100.0000 | 79.1667 | 25 | 5 | 25 | 0 | 0 | ||
| ndellapenna-hhga | SNP | * | map_l125_m2_e0 | hetalt | 90.9091 | 83.3333 | 100.0000 | 82.3944 | 25 | 5 | 25 | 0 | 0 | ||
| ndellapenna-hhga | SNP | * | map_l125_m2_e1 | hetalt | 90.9091 | 83.3333 | 100.0000 | 82.5175 | 25 | 5 | 25 | 0 | 0 | ||
| ndellapenna-hhga | SNP | ti | map_l100_m1_e0 | hetalt | 90.9091 | 86.2069 | 96.1538 | 77.1930 | 25 | 4 | 25 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | SNP | tv | map_l125_m1_e0 | hetalt | 90.9091 | 83.3333 | 100.0000 | 79.1667 | 25 | 5 | 25 | 0 | 0 | ||
| ndellapenna-hhga | SNP | tv | map_l125_m2_e0 | hetalt | 90.9091 | 83.3333 | 100.0000 | 82.3944 | 25 | 5 | 25 | 0 | 0 | ||
| ndellapenna-hhga | SNP | tv | map_l125_m2_e1 | hetalt | 90.9091 | 83.3333 | 100.0000 | 82.5175 | 25 | 5 | 25 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 76.3171 | 63.2653 | 96.1538 | 23.5294 | 31 | 18 | 25 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 86.2069 | 75.7576 | 100.0000 | 59.0164 | 25 | 8 | 25 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D6_15 | map_l150_m1_e0 | homalt | 96.1538 | 96.1538 | 96.1538 | 88.9831 | 25 | 1 | 25 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | segdup | hetalt | 71.0526 | 55.1020 | 100.0000 | 90.5303 | 27 | 22 | 25 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 92.0000 | 85.1852 | 100.0000 | 72.8261 | 23 | 4 | 25 | 0 | 0 | ||
| mlin-fermikit | INDEL | * | map_l125_m1_e0 | hetalt | 75.7576 | 62.5000 | 96.1538 | 87.0647 | 25 | 15 | 25 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 69.4444 | 56.8182 | 89.2857 | 94.6463 | 25 | 19 | 25 | 3 | 3 | 100.0000 | |
| mlin-fermikit | INDEL | D1_5 | map_l100_m2_e1 | hetalt | 64.0000 | 47.0588 | 100.0000 | 89.0351 | 24 | 27 | 25 | 0 | 0 | ||
| qzeng-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 0.0000 | 0.0000 | 80.6452 | 93.0649 | 0 | 0 | 25 | 6 | 1 | 16.6667 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 41.3223 | 100.0000 | 26.0417 | 79.7040 | 23 | 0 | 25 | 71 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | map_l125_m2_e1 | het | 52.7550 | 90.0000 | 37.3134 | 94.1434 | 18 | 2 | 25 | 42 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D6_15 | map_l150_m2_e1 | homalt | 86.2069 | 86.2069 | 86.2069 | 88.9313 | 25 | 4 | 25 | 4 | 3 | 75.0000 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 49.0937 | 86.6667 | 34.2466 | 60.9626 | 13 | 2 | 25 | 48 | 1 | 2.0833 | |
| qzeng-custom | INDEL | I16_PLUS | segdup | het | 85.8034 | 91.6667 | 80.6452 | 93.8370 | 22 | 2 | 25 | 6 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 95.8333 | 92.0000 | 100.0000 | 44.4444 | 23 | 2 | 25 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D6_15 | map_l150_m2_e1 | homalt | 92.5926 | 86.2069 | 100.0000 | 90.7063 | 25 | 4 | 25 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 97.7778 | 95.6522 | 100.0000 | 7.4074 | 22 | 1 | 25 | 0 | 0 | ||
| astatham-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 95.8333 | 92.0000 | 100.0000 | 44.4444 | 23 | 2 | 25 | 0 | 0 | ||
| astatham-gatk | INDEL | D16_PLUS | map_l100_m0_e0 | * | 86.2069 | 89.2857 | 83.3333 | 96.8051 | 25 | 3 | 25 | 5 | 0 | 0.0000 | |
| astatham-gatk | INDEL | D6_15 | map_l150_m1_e0 | homalt | 98.0392 | 96.1538 | 100.0000 | 89.4958 | 25 | 1 | 25 | 0 | 0 | ||
| astatham-gatk | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 96.1538 | 100.0000 | 92.5926 | 92.8191 | 25 | 0 | 25 | 2 | 2 | 100.0000 | |
| astatham-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 95.5224 | 91.4286 | 100.0000 | 91.4384 | 32 | 3 | 25 | 0 | 0 | ||
| astatham-gatk | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 96.1538 | 92.5926 | 100.0000 | 97.7558 | 25 | 2 | 25 | 0 | 0 | ||
| astatham-gatk | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | * | 98.0392 | 96.1538 | 100.0000 | 96.8153 | 25 | 1 | 25 | 0 | 0 | ||
| anovak-vg | INDEL | D16_PLUS | map_l100_m1_e0 | het | 63.2911 | 50.0000 | 86.2069 | 85.6436 | 23 | 23 | 25 | 4 | 3 | 75.0000 | |
| anovak-vg | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 44.5986 | 69.2308 | 32.8947 | 40.6250 | 9 | 4 | 25 | 51 | 46 | 90.1961 | |